YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL  60
   61 FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR LTCLVFLSFV LTLYVANRSK 120
  121 PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI 180
  181 TSTPPKLNMS EARAEAEAVM FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN 240
  241 HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM 300
  301 LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV 360
  361 SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK RKMFKLKVKP YIPDFKLAFE 420
  421 HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG 480
  481 DRLWQIAFGS GFKCNSAVWK ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Type	Start	End	Confidence
Cytoplasmic	1	55	0.93
Transmembrane Helix	56	77	0.88
Non-Cytoplasmic	78	96	0.87
Transmembrane Helix	97	116	0.79
Cytoplasmic	117	250	0.80
Transmembrane Helix	251	268	0.57
Non-Cytoplasmic	269	299	0.73
Transmembrane Helix	300	317	0.54
Cytoplasmic	318	528	0.65