YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7485468, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	56	0.82
Non-Cytoplasmic	57	65	0.68
Transmembrane Helix	66	89	0.81
Cytoplasmic	90	108	0.82
Transmembrane Helix	109	128	0.89
Non-Cytoplasmic	129	147	0.78
Transmembrane Helix	148	167	0.88
Cytoplasmic	168	176	0.79
Transmembrane Helix	177	200	0.91
Non-Cytoplasmic	201	208	0.85
Transmembrane Helix	209	231	0.80
Cytoplasmic	232	249	0.82
Transmembrane Helix	250	271	0.88
Non-Cytoplasmic	272	291	0.82
Transmembrane Helix	292	310	0.73
Cytoplasmic	311	322	0.75
Transmembrane Helix	323	346	0.87
Non-Cytoplasmic	347	362	0.68
Transmembrane Helix	363	384	0.67
Cytoplasmic	385	397	0.60
Transmembrane Helix	398	420	0.87
Non-Cytoplasmic	421	426	0.65
Transmembrane Helix	427	449	0.93
Cytoplasmic	450	466	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREEREDMLS WPLIGEKEKR SRFVKEEVEK QLLLSGPLIA VSLLQFCLQI ISVMFVGHLG  60
   61 SLPLSAASIA TSFASVTGFT FLMGTASAMD TVCGQSYGAK MYGMLGIQMQ RAMLVLTLLS 120
  121 VPLSIVWANT EHFLVFFGQD KSIAHLSGSY ARFMIPSIFA YGLLQCLNRF LQAQNNVIPV 180
  181 VICSGVTTSL HVIICWVLVL KSGLGFRGAA VANAISYWLN VILLSCYVKF SPSCSLTWTG 240
  241 FSKEARRDII PFMKLVIPSA FMVCSLEMWS FELLVLSSGL LPNPVLETSC PRTVWMIPFG 300
  301 LSGAASTRVS NELGSGNPKG AKLAVRVVLS FSIVESILVG TVLILIRKIW GFAYSSDPEV 360
  361 VSHVASMLPI LALGHSLDSF QTVLSGVARG CGWQKIGAFV NLGSYYLVGV PFGLLLGFHF 420
  421 HVGGRGLWLG IICALIVQGV CLSLITFFTN WDEEVKPSPC LVYFYF