YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMN6_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	273	0.99
Transmembrane Helix	274	296	0.89
Cytoplasmic	297	338	0.96
Transmembrane Helix	339	362	0.92
Non-Cytoplasmic	363	371	0.79
Transmembrane Helix	372	391	0.95
Cytoplasmic	392	410	0.87
Transmembrane Helix	411	431	0.94
Non-Cytoplasmic	432	440	0.80
Transmembrane Helix	441	462	0.92
Cytoplasmic	463	495	0.92
Transmembrane Helix	496	518	0.89
Non-Cytoplasmic	519	527	0.76
Transmembrane Helix	528	553	0.89
Cytoplasmic	554	562	0.87
Transmembrane Helix	563	584	0.90
Non-Cytoplasmic	585	604	0.80
Transmembrane Helix	605	625	0.96
Cytoplasmic	626	637	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRIRISGT LLLSFLFFST LHAFYLPGVA PRDFQKGDPL YVKVNKLSST KTQLPYDFYY  60
   61 LNYCKPPKIL NTGENLGEVL RGDRIENSVY TFEMLEDQPC RVGCRVRVDA ESAKNFREKI 120
  121 DYEYRANMIL DNLPVAVLRQ RKDGIQSTTY EHGYRVGFKG SYEGSKEKKY FIHNHLSFRV 180
  181 MYHRDQESES SRIVGFEVTP NSVLHEYKEW DENNPQLTTC NKDTKNLIQS NTVPQEVEEG 240
  241 KEIVFTYDVA FKESVIKWAS RWDTYLLMND DQIHWFSIIN SLMIVLFLSG MVAMIMMRTL 300
  301 YKDISNYNQL ETQDEAQEET GWKLVHGDVF RTPMNSGLLC VYVGTGVQIF GMTLVTMIFA 360
  361 LLGFLSPSNR GGLTTAMVLL WVFMGIFAGY SSSRLHKMFK GNEWKRITLK TAFMFPGILF 420
  421 AIFFVLNTLI WGERSSGAIP FSTMFALVCL WFGISVPLVF IGSYLGHKKP AIEDPVKTNK 480
  481 IPRQVPEQPW YMKPGFSILI GGILPFGAVF IELFFILTSI WLNQFYYIFG FLFIVFLILI 540
  541 VTCAEITIVL CYFQLCSEDY NWCWRAYLTS GSSSLYLFLY SVFYFFTKLE ISKLVSGVLY 600
  601 FGYMIIISYS FFVLTGSIGF YACLWFVRKI YSSVKID