YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15227541, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	1482	0.96
Transmembrane Helix	1483	1503	0.66
Cytoplasmic	1504	1523	0.81
Transmembrane Helix	1524	1544	0.91
Non-Cytoplasmic	1545	1557	0.82
Transmembrane Helix	1558	1579	0.91
Cytoplasmic	1580	1609	0.90
Transmembrane Helix	1610	1633	0.85
Non-Cytoplasmic	1634	1652	0.81
Transmembrane Helix	1653	1672	0.81
Cytoplasmic	1673	1684	0.59
Transmembrane Helix	1685	1705	0.73
Non-Cytoplasmic	1706	1711	0.43
Transmembrane Helix	1712	1726	0.59
Cytoplasmic	1727	1735	0.71
Transmembrane Helix	1736	1755	0.89
Non-Cytoplasmic	1756	1772	0.85
Transmembrane Helix	1773	1793	0.93
Cytoplasmic	1794	1805	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSSSSSSSI FLQFPPARIT TASPFILRRS RKRGARFKRQ SRNLVLVNSS IFPPPFDGSV  60
   61 PLDSSLAPSL AGIASGLAVY LSSRFFGKSL EKISDKIVDD VVVGEWILFT TPTPFNRFVL 120
  121 LRCSLLSFDD DSEKSLSDRL VTEERHFVTL DSGKIVRDGA VTDEKTPLEY QRVCITMEDG 180
  181 GVVSLDWPAN LDIREERGLD TTVVFIPGTP EGSMEEGVRS FVCEALRRGV FPVVMNPRGC 240
  241 AGSPLTTPRL FTAGDSDDIS TALRFLSKTR PWTTLTAVGR GYGANMLTKY LAEAGERTPL 300
  301 TAAVCIDNPF DLEEITRTSP YSTSLDQQLT RGLVEILLAN KELFQGRAKA FDVGKALCSK 360
  361 SVREFDKALS MVTYGCESIE DFYSSCATRE VIGEVKVPLL FIQNDDVVPP YTIPRSSIAE 420
  421 NPFTSLLLCS SSPNLIDGRT VAVSWCQDLA KIDFPMLAMQ WLTAVELGLL KGRHPLLEDV 480
  481 DVTVNPSKGL VFSEARAPEK SIGAKKLVQA AHEKTVNGYH LDPFRETLED SDMTPNSNLS 540
  541 PETDLEKNVK IDYGSDETEN NIVSTRVESI EDNESNVEES DRGQVLQTAE VVVSMLDVTM 600
  601 PGTLKAEEKK KVMDAVGRGE TVLTALQDAV PEDVREKLTT AVTGILQSGG TKLNLENLKL 660
  661 PSIAPGLKKA EEEKKETSSA IGQSDSYSPD PKDKSDGLVS GSDETISGSD NSPGGVELEH 720
  721 SPSKVSQRNS DSGKSQPVDN DQDDSPGNHE SHTNEKTSAA DDSEMASEAK SDSANQGPIG 780
  781 AEAVTNNDDK VEQGSGVATH QGQVETSKND EKGAPIANEK SSVADGFEKA SDAKNDSTNP 840
  841 QPVGADDITS DGDKVDQGVV LAQQQRKDET SKSDENAKQS ATDQNKVTST DNEGDAGKSS 900
  901 ASQPVEKDES NDQSKETKVM QPVSDQTKPA IQEPNQPNFN VSQAFEALTG MDDSTQVAVN 960
  961 SVFGVLENMI SQLDEEKKEG NEVSDEKNLK DEKNLKDAKN VTNEVVSPSE EEIPYKRETK1020
 1021 SLMPSAKSRD PACSVSETEK CSDNDKVTGV VIEKQLGRDE FVIGKHSPKI LPERKTDSIE1080
 1081 NSSHDGYLGE ELSKEKIAKQ LDLDTTTALM LDYYPEEGKW KLLDQQPKRL DDDYYPEEGK1140
 1141 WKLLDQQPEY LGNVADNAAA SRNTHDNVQV HSLSVDNEET IEPSYVIVDH EQELELSGMH1200
 1201 DAADNQNDGP HKLDEGCEEL EHLINVIVSD SLNVEIQRRM GSAGMRQIES QLSRDIKKVA1260
 1261 KTFSYAVVYS EPTWTFKRNS KTSNVPAGKV GKLRGDAIIR AIASAVQEAH FLRQVLPIGV1320
 1321 VVGSVLAALR KYFDVSTTTN NAKRDVVPGR RQKYENNGAM ASVLPDKVSK ETKQNNSSIG1380
 1381 EMVESGLQSI NNKSAMVGAV TAALGASAML VQHEDPQRGG IMSKSSDKDS QQKESGQLDQ1440
 1441 SSMVGSFAEK AMSIAGPAVP TKETGEVDQD RIVAMLADLG QRGGILSLVG KLALLWGGLR1500
 1501 GAMSLTDRLI QFLHMDEWPL LKRAVGFIGM VLVLWSPVVI PLLPTLLQNW STSNPSRVAE1560
 1561 LASVVGLYVA VFILVMLWGK RVRKYENPFK QYGLDLKASN KEKIQEFLKA FAGGITVVLL1620
 1621 IQFINAISGA AFLSRPPYFP HSFDAMKWLK GCGQFLLLII RGFTAATFVV LVEELLFRSW1680
 1681 MPAEIAIDLG YHQSIIITGL IFALFQRSLR SIPGFWLLSL ALTWARERSQ GNLIVPIGLR1740
 1741 AGIIASSFIL QSGGFLTYNP SSPVWIAGSR PSQPFSGVVG LMVSLALALI LYPKRSPETK1800
 1801 MQKYN