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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FTSH9_ARATH
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.26
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIELLSPL IHDKFRFSTC CSTSSLLYLH ASSFFRDRSF GFRQNPNRFV SNSSIQLPQS  60
   61 VPGSINQERF NLWQGFSRKK STSSSRTIVN CQEGDQKASS SEGEGKTNKD KGRKQGKNEL 120
  121 WWSKGKKWQW KPIIQAQEIG VMLLQLGIVM FVVRLLRPGI PLPGSEPRTQ TTFMSVPYSD 180
  181 FLSKVNNDEV QKVEVDGFHV LFKLKDDGNL QESETSSSSI KLSESSETML RSVAPTKRVV 240
  241 YSTTRPRDIK TPYEKMLENN VEFGSPDKRS GGFFNSGLIV LFYIAVLAGL LHRFPVNFSQ 300
  301 STTGQLRTRK SGGPGGGKVS GDGETITFAD VAGVDEAKEE LEEIVEFLKN PDRYVRLGAR 360
  361 PPRGVLLVGL PGTGKTLLAK AVAGESDVPF ISCSASEFVE LYVGMGASRV RDLFARAKKE 420
  421 APSIIFIDEI DAVAKSRDGK FRMVSNDERE QTLNQLLTEM DGFDSSSAVI VLGATNRADV 480
  481 LDPALRRPGR FDRVVTVESP DKVGRESILK VHVSKKELPL GDDVNLASIA SMTTGFTGAD 540
  541 LANLVNEAAL LAGRKSKMTV DKIDFIHAVE RSIAGIEKKT ARLKGSEKAV VARHEAGHAV 600
  601 VGTAVASLLS GQSRVEKLSI LPRSGGALGF TYIPPTHEDR YLLFIDELHG RLVTLLGGRA 660
  661 AEEVVYSGRI STGALDDIRR ATDMAYKAVA EYGLNEKIGP VSVATLSAGG IDDSGGSPWG 720
  721 RDQGHLVDLV QREVTNLLQS ALDVALTVVR ANPDVLEGLG AQLEDEEKVE GEELQKWLNR 780
  781 VVPSEELAVF IKGKQTALLP AQASSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle