YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR40_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	44	0.85
Non-Cytoplasmic	45	64	0.69
Transmembrane Helix	65	83	0.83
Cytoplasmic	84	91	0.56
Transmembrane Helix	92	113	0.86
Non-Cytoplasmic	114	135	0.87
Transmembrane Helix	136	158	0.89
Cytoplasmic	159	173	0.91
Transmembrane Helix	174	195	0.92
Non-Cytoplasmic	196	203	0.73
Transmembrane Helix	204	223	0.95
Cytoplasmic	224	319	0.95
Transmembrane Helix	320	340	0.90
Non-Cytoplasmic	341	356	0.82
Transmembrane Helix	357	379	0.89
Cytoplasmic	380	396	0.83
Transmembrane Helix	397	416	0.92
Non-Cytoplasmic	417	436	0.84
Transmembrane Helix	437	457	0.95
Cytoplasmic	458	475	0.89
Transmembrane Helix	476	497	0.92
Non-Cytoplasmic	498	516	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSVDTEAM TTRDPSSKRG GWKTFPFMIA TLLGLSIASF GWVMNLVVFL IKEFNIKSIA  60
   61 ATQNSNIVNG CVSMLPVVAA ILADSFFGNI PVISVSAFIS LLGIILLTMI TSLDHLRPPP 120
  121 CETGSILCES PSKLQLGILY IALALVIIGS AGTRFTLASA GANQYEKPKE QGSFFNWYFL 180
  181 TLYTGAITGA TAIVYTQENA SWKLGFGLCA VANLISFIVF VSGKRYYKHD KPMGSPFTNL 240
  241 IRVVVAATRK RKAVISSREE DYHHGLGREG KTSSAMPSKS FRFFNRAALK TEDDSVNNNW 300
  301 RLCSVQEVED FKAVFRVLPL LLAIIFVSTP MVTQTSLIIL QALVTDRGLG PHFKIPAGSL 360
  361 QVIVIITACI VILMNNCLVY PMYQKLAHKP LTPLQKVGIG HVFIILSMAI SAIVEAKRLK 420
  421 TVTNGHSMSV LWLHRDFIAS VVIGISFYLS TALITLIQKT TKWLPNDINH GRVDNVYWLL 480
  481 VIVGVLNYFL VCAWFYRYRN LNDDDDQEQD PKDDTT