YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLPT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.98
Transmembrane Helix	33	53	0.91
Non-Cytoplasmic	54	90	0.97
Transmembrane Helix	91	114	0.89
Cytoplasmic	115	122	0.86
Transmembrane Helix	123	144	0.94
Non-Cytoplasmic	145	156	0.71
Transmembrane Helix	157	178	0.89
Cytoplasmic	179	185	0.92
Transmembrane Helix	186	209	0.87
Non-Cytoplasmic	210	215	0.74
Transmembrane Helix	216	236	0.93
Cytoplasmic	237	283	0.95
Transmembrane Helix	284	305	0.86
Non-Cytoplasmic	306	332	0.85
Transmembrane Helix	333	351	0.91
Cytoplasmic	352	358	0.81
Transmembrane Helix	359	380	0.89
Non-Cytoplasmic	381	387	0.75
Transmembrane Helix	388	410	0.90
Cytoplasmic	411	425	0.83
Transmembrane Helix	426	451	0.82
Non-Cytoplasmic	452	457	0.74
Transmembrane Helix	458	479	0.92
Cytoplasmic	480	510	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWTSSEFL YEEVKPPGIH FLERFRRSGK LSFKQYQAMV FVLTFIAYIA FHATRKPNSI  60
   61 VKGTLSEQPT GHFKGADKGG WAPFDGPDGT ALLGQIDLAF LSVYAVGMFV AGHLGDRLDL 120
  121 RTFLTIGMVG TGVCTALFGV AFWANIHAFY YFLAIQTLAG WFQSIGWPCV VAVLGNWFDK 180
  181 KRRGVIMGVW SAHTSLGNII GTLIATGLLK FGWGWSFVGP ALLITFLGIV VYLFLPVNPH 240
  241 AVEAERDGSE VDSTMRLGDT ITESFLSSRT STGFDRRAVG FLAAWKIPGV APFAFCLFFT 300
  301 KLVSYTFLYW LPFYVSQTEI GGEQLSQETS GNLSTLFDVG GVVGGILAGY FSDQLDGRAI 360
  361 TAGGFIYLTI PALFLYRIYG HVSMTINIIL MFVAGLFVNG PYALITTAVA ADLGTHKSLK 420
  421 GNARALATVT AIIDGTGSVG AAIGPVLTGY IAAISWDAVF YMLMTAALIS GLLLTTLIIE 480
  481 EVKTLLYGSS EEDHEVAAAS TSRPPIDVLI