YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y1112_ARATH
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIHLGEIGI VLFPWFLWLS LFLSCGYAAI TISSPLTLGQ TLSSPGGFYE LGFFSPNNSQ  60
   61 NQYVGIWFKK ITPRVVVWVA NREKPITTPV ANLTISRNGS LILLDSSKNV VWSTRRPSIS 120
  121 NKCHAKLLDT GNLVIVDDVS ENLLWQSFEN PGDTMLPYSS LMYNLATGEK RVLSSWKSHT 180
  181 DPSPGDFVVR LTPQVPAQIV TMRGSSVYKR SGPWAKTGFT GVPLMDESYT SPFSLSQDVG 240
  241 NGTGLFSYLQ RSSELTRVII TSEGYLKTFR YNGTGWVLDF ITPANLCDLY GACGPFGLCV 300
  301 TSNPTKCKCM KGFVPKYKEE WKRGNMTSGC MRRTELSCQA NLSTKTQGKG VDVFYRLANV 360
  361 KPPDLYEYAS FVDADQCHQG CLSNCSCSAF AYITGIGCLL WNHELIDTIR YSVGGEFLSI 420
  421 RLASSELAGS RRTKIIVGSI SLSIFVILAF GSYKYWRYRA KQNVGPTWAF FNNSQDSWKN 480
  481 GLEPQEISGL TFFEMNTIRA ATNNFNVSNK LGQGGFGPVY KGTLSDKKDI AVKRLSSSSG 540
  541 QGTEEFMNEI KLISKLQHRN LVRLLGCCID GEEKLLIYEF LVNKSLDTFL FDLTLKLQID 600
  601 WPKRFNIIQG VSRGLLYLHR DSCMRVIHRD LKVSNILLDD KMNPKISDFG LARMFQGTQH 660
  661 QDNTRKVVGT LGYMSPEYAW TGMFSEKSDI YAFGVLLLEI ISGKKISSFC CGEEGKTLLG 720
  721 HAWECWLETG GVDLLDEDIS SSCSPVEVEV ARCVQIGLLC IQQQAVDRPN IAQVVTMMTS 780
  781 ATDLPRPKQP LFALQIQDQE SVVSVSKSVN HVTQTEIYGR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle