YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRN_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRRRRNGC SSSNTISLLL LFFLVFFSRT STSTSCRRRT VKHLSTTSTS STPLESRITS  60
   61 KVIVISIVSG ILTGLVSALV LAFLVRSIVK FMKQTPILKG PVVFSPKITP KSLHAALSNG 120
  121 IQLLGSDLNG KYYKMVLDNG LVVAVKRLGS LEGVGSPESS SSKSVKRRLQ KELELLAGLR 180
  181 HRNLMSLRAY VRESDEFSLV YDYMPNGSLE DVMNKVRTKE VELGWEIRLR VAVGIVKGLQ 240
  241 YLHFSCETQI LHYNLKPTNV MLDSEFEPRL ADCGLAKIMP SSHTAVSCYS APESSQSNRY 300
  301 TDKSDIFSFG MILGVLLTGR DPTHPFCEES ASGGSLGQWL KHLQQSGEAR EALDKTILGE 360
  361 EVEEDEMLMA LRITIICLSD FPADRPSSDE LVHMLTQLHS F

Type	Start	End	Confidence
Signal Peptide	1	36	0.89
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	401	0.63