YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT26_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.97
Transmembrane Helix	75	96	0.92
Non-Cytoplasmic	97	109	0.81
Transmembrane Helix	110	129	0.81
Cytoplasmic	130	138	0.60
Transmembrane Helix	139	159	0.87
Non-Cytoplasmic	160	164	0.70
Transmembrane Helix	165	186	0.89
Cytoplasmic	187	193	0.70
Transmembrane Helix	194	216	0.79
Non-Cytoplasmic	217	232	0.69
Transmembrane Helix	233	255	0.89
Cytoplasmic	256	290	0.79
Transmembrane Helix	291	312	0.85
Non-Cytoplasmic	313	321	0.72
Transmembrane Helix	322	341	0.94
Cytoplasmic	342	361	0.77
Transmembrane Helix	362	382	0.93
Non-Cytoplasmic	383	387	0.73
Transmembrane Helix	388	410	0.93
Cytoplasmic	411	417	0.74
Transmembrane Helix	418	441	0.88
Non-Cytoplasmic	442	450	0.72
Transmembrane Helix	451	471	0.94
Cytoplasmic	472	542	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHNHSNEDG SIGTSLHGVT AREQVFSFSV QEDVPSSQAV RTNDPTAKFA LPVDSEHRAK  60
   61 VFKPLSFAKP HMRAFHLGWI SFFTCFISTF AAAPLVPVIR DNLDLTKTDI GNAGVASVSG 120
  121 AIFSRLAMGA VCDLLGARYG TAFSLMLTAP AVFSMSFVAD AGSYLAVRFM IGFCLATFVS 180
  181 CQYWTSVMFT GKIIGLVNGC AGGWGDMGGG VTQLLMPMVF HVIKLTGATP FTAWRFAFFI 240
  241 PGILQIVMGI LVLTLGQDLP DGNLSTLQKS GQVSKDKFSK VFWFAVKNYR TWILFMLYGF 300
  301 SMGVELTINN VISGYFYDRF NLTLHTAGII AASFGMANFF ARPFGGYASD VAARLFGMRG 360
  361 RLWILWILQT VGALFCIWLG RASSLPIAIL AMMLFSMGTQ AACGALFGVA PFVSRRSLGL 420
  421 ISGLTGAGGN FGSGVTQLLF FSSSRFSTAE GLSLMGVMAV VCSLPVAFIH FPQWGSMFLR 480
  481 PSQDGEKSKE EHYYGAEWTE EEKSLGLHEG SIKFAENSRS ERGRKAMLAD IPTPETGSPA 540
  541 HV