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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3461839, gi|1...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSHLLLAII GTFAVIVGAQ KQEGFISLDC GFPIEESPYS DPSTGLTFTS DSTFIQTGES  60
   61 GRVDKELNKI FRKPYLTLRY FPEGKRNCSL RNSFRVHCST SDSEIRYDDD SYDRVWYPFF 120
  121 SSSFSYITTS LNINNSDTFE IPKAALKSAA TPKNASAPLI ITWKPRPSNA EVYFYLHFAE 180
  181 IQTLAANETR EFDIVFKGNF NYSAFSPTKL ELLTFFTSGP VQCDSDGCNL QLVRTPNSTL 240
  241 PPLINALEAY TIIEFPQLET SLSDVNAIKN IKATYRLSKT SWQGDPCLPQ ELSWENLRCS 300
  301 YTNSSTPPKI ISLNLSASGL TGSLPSVFQN LTQIQELDLS NNSLTGLVPS FLANIKSLSL 360
  361 LDLSGNNFTG SVPQTLLDRE KEGLVLKLEG NPELCKFSSC NPKKKKGLLV PVIASISSVL 420
  421 IVIVVVALFF VLRKKKMPSD AQAPPSLPVE DVGQAKHSES SFVSKKIRFA YFEVQEMTNN 480
  481 FQRVLGEGGF GVVYHGCVNG TQQVAVKLLS QSSSQGYKHF KAEVELLMRV HHKNLVSLVG 540
  541 YCDEGDHLAL IYEYMPNGDL KQHLSGKRGG FVLSWESRLR VAVDAALGLE YLHTGCKPPM 600
  601 VHRDIKSTNI LLDERFQAKL ADFGLSRSFP TENETHVSTV VAGTPGYLDP EYYQTNWLTE 660
  661 KSDVYSFGIV LLEIITNRPI IQQSREKPHL VEWVGFIVRT GDIGNIVDPN LHGAYDVGSV 720
  721 WKAIELAMSC VNISSARRPS MSQVVSDLKE CVISENSRTG ESREMNSMSS IEFSMGIDTE 780
  781 VIPKAR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle