YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.74
Transmembrane Helix	29	52	0.87
Non-Cytoplasmic	53	57	0.61
Transmembrane Helix	58	79	0.90
Cytoplasmic	80	111	0.70
Transmembrane Helix	112	134	0.84
Non-Cytoplasmic	135	183	0.64
Transmembrane Helix	184	208	0.87
Cytoplasmic	209	273	0.80
Transmembrane Helix	274	295	0.94
Non-Cytoplasmic	296	312	0.92
Transmembrane Helix	313	334	0.90
Cytoplasmic	335	378	0.96
Transmembrane Helix	379	399	0.89
Non-Cytoplasmic	400	404	0.76
Transmembrane Helix	405	425	0.90
Cytoplasmic	426	435	0.93
Transmembrane Helix	436	461	0.86
Non-Cytoplasmic	462	467	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKEDDESR VITPTELQLH DSVTARTGTL WTAVAHIITG VIGAGVLSLA WATAELGWIA  60
   61 GPAALIAFAG VTLLSAFLLS DCYRFPDPNN GPLRLNSYSQ AVKLYLGKKN EIVCGVVVYI 120
  121 SLFGCGIAYT IVIATCSRAI MKSNCYHRNG HNATCSYGDN NNYFMVLFGL TQIFMSQIPN 180
  181 FHNMVWLSLV AAIMSFTYSF IGIGLALGKI IENRKIEGSI RGIPAENRGE KVWIVFQALG 240
  241 NIAFSYPFSI ILLEIQDTLR SPPAEKQTMK KASTVAVFIQ TFFFFCCGCF GYAAFGDSTP 300
  301 GNLLTGFGFY EPFWLVDFAN ACIVLHLVGG YQVYSQPIFA AAERSLTKKY PENKFIARFY 360
  361 GFKLPLLRGE TVRLNPMRMC LRTMYVLITT GVAVMFPYFN EVLGVVGALA FWPLAVYFPV 420
  421 EMCILQKKIR SWTRPWLLLR GFSFVCLLVC LLSLVGSIYG LVGAKFG