YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11072032, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKLRSEET ITSLSSFMAS TLSIASPSPC SIPLSVTKVS PLKRKRPTHL NIPDLNPQQP  60
   61 ISTDYFRFRE GDAKVSPLKR KRPAHLNIPD LNPQQPIRTD YFSFTDFAHQ NGTVSFGGNG 120
  121 FGVVSRNGKK KFMEDTHRIV PCLVGNSKKS FFGVYDGHGG AKAAEFVAEN LHKYVVEMME 180
  181 NCKGKEEKVE AFKAAFLRTD RDFLEKVIKE QSLKGVVSGA CCVTAVIQDQ EMIVSNLGDC 240
  241 RAVLCRAGVA EALTDDHKPG RDDEKERIES QSLIPFMTFG LQGGYVDNHQ GAWRVQGILA 300
  301 VSRSIGDAHL KKWVVAEPET RVLELEQDME FLVLASDGLW DVVSNQEAVY TVLHVLAQRK 360
  361 TPKESEEENL VQGFVNMSPS SKLRRASLVK SPRCAKSQSY YYNSENESPS LNREIGSSPS 420
  421 KSPITPWKSL WAKAACKELA NLAAKRGSMD DITVVIIDLN HYKG

Type	Start	End	Confidence
Signal Peptide	1	27	0.83
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	464	0.99