YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	46	0.90
Non-Cytoplasmic	47	64	0.85
Transmembrane Helix	65	84	0.90
Cytoplasmic	85	93	0.80
Transmembrane Helix	94	113	0.96
Non-Cytoplasmic	114	119	0.74
Transmembrane Helix	120	142	0.88
Cytoplasmic	143	151	0.83
Transmembrane Helix	152	173	0.88
Non-Cytoplasmic	174	182	0.80
Transmembrane Helix	183	205	0.90
Cytoplasmic	206	282	0.95
Transmembrane Helix	283	305	0.67
Non-Cytoplasmic	306	322	0.76
Transmembrane Helix	323	344	0.86
Cytoplasmic	345	351	0.80
Transmembrane Helix	352	374	0.92
Non-Cytoplasmic	375	384	0.81
Transmembrane Helix	385	411	0.84
Cytoplasmic	412	423	0.78
Transmembrane Helix	424	446	0.81
Non-Cytoplasmic	447	451	0.68
Transmembrane Helix	452	474	0.90
Cytoplasmic	475	511	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSGVEQGV VIAESEPPRG NRSRYAFACA ILASMTSIIL GYDIGVMSGA SIFIKDDLKL  60
   61 SDVQLEILMG ILNIYSLVGS GAAGRTSDWL GRRYTIVLAG AFFFCGALLM GFATNYPFIM 120
  121 VGRFVAGIGV GYAMMIAPVY TAEVAPASSR GFLTSFPEIF INIGILLGYV SNYFFSKLPE 180
  181 HLGWRFMLGV GAVPSVFLAI GVLAMPESPR WLVLQGRLGD AFKVLDKTSN TKEEAISRLD 240
  241 DIKRAVGIPD DMTDDVIVVP NKKSAGKGVW KDLLVRPTPS VRHILIACLG IHFAQQASGI 300
  301 DAVVLYSPTI FSKAGLKSKN DQLLATVAVG VVKTLFIVVG TCVVDRFGRR ALLLTSMGGM 360
  361 FLSLTALGTS LTVINRNPGQ TLKWAIGLAV TTVMTFVATF SIGAGPVTWV YCSEIFPVRL 420
  421 RAQGASLGVM LNRLMSGIIG MTFLSLSKGL TIGGAFLLFA GVAAAAWVFF FTFLPETRGI 480
  481 PLEEMETLFG SYTANKKNNS MSKDNEVVDG Q