YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDANGGPVQI RTQNYVKLGY HYLITHFFKL MFLPLMAVLF MNVSLLSLNH LQLYYNSTGF  60
   61 IFVITLAIVG SIVFFMSRPR SIYLLDYSCY LPPSSQKVSY QKFMNNSSLI QDFSETSLEF 120
  121 QRKILIRSGL GEETYLPDSI HSIPPRPTMA AAREEAEQVI FGALDNLFEN TKINPREIGV 180
  181 LVVNCSLFNP TPSLSAMIVN KYKLRGNIKS FNLGGMGCSA GVIAVDLASD MLQIHRNTFA 240
  241 LVVSTENITQ NWYFGNKKAM LIPNCLFRVG GSAVLLSNKP LDRKRSKYKL VHTVRTHKGS 300
  301 DENAFNCVYQ EQDECLKTGV SLSKDLMAIA GEALKTNITS LGPLVLPISE QILFFATFVA 360
  361 KRLFNDKKKK PYIPDFKLAL DHFCIHAGGR AVIDELEKSL KLSPKHVEAS RMTLHRFGNT 420
  421 SSSSIWYELA YTEAKGRMRK GNRVWQIAFG SGFKCNSAVW VALRNVEPSV NNPWEHCIHR 480
  481 YPVKIDL

Type	Start	End	Confidence
Cytoplasmic	1	25	0.80
Transmembrane Helix	26	46	0.86
Non-Cytoplasmic	47	56	0.61
Transmembrane Helix	57	76	0.94
Cytoplasmic	77	209	0.87
Transmembrane Helix	210	229	0.68
Non-Cytoplasmic	230	487	0.59