YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLA2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGVSPKFVL PETFDGVRME ITGQLGMIWE LVKAPVIVPL LQLAVYICLL MSVMLLCERV  60
   61 YMGIVIVLVK LFWKKPDKRY KFEPIHDDEE LGSSNFPVVL VQIPMFNERE VYKLSIGAAC 120
  121 GLSWPSDRLV IQVLDDSTDP TVKQMVEVEC QRWASKGINI RYQIRENRVG YKAGALKEGL 180
  181 KRSYVKHCEY VVIFDADFQP EPDFLRRSIP FLMHNPNIAL VQARWRFVNS DECLLTRMQE 240
  241 MSLDYHFTVE QEVGSSTHAF FGFNGTAGIW RIAAINEAGG WKDRTTVEDM DLAVRASLRG 300
  301 WKFLYLGDLQ VKSELPSTFR AFRFQQHRWS CGPANLFRKM VMEIVRNKKV RFWKKVYVIY 360
  361 SFFFVRKIIA HWVTFCFYCV VLPLTILVPE VKVPIWGSVY IPSIITILNS VGTPRSIHLL 420
  421 FYWILFENVM SLHRTKATLI GLFEAGRANE WVVTAKLGSG QSAKGNTKGI KRFPRIFKLP 480
  481 DRLNTLELGF AAFLFVCGCY DFVHGKNNYF IYLFLQTMSF FISGLGWIGT YVPS

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.57
Transmembrane Helix	36	69	0.66
Cytoplasmic	70	367	0.93
Transmembrane Helix	368	388	0.89
Non-Cytoplasmic	389	400	0.71
Transmembrane Helix	401	426	0.73
Cytoplasmic	427	482	0.95
Transmembrane Helix	483	504	0.89
Non-Cytoplasmic	505	509	0.85
Transmembrane Helix	510	531	0.93
Cytoplasmic	532	534	0.77