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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25387094, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.59
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPSILSLV VSSIFLCMSF CSSLNSDGLS LLALKSAVDN DPTRVMTHWS ESDPTPCHWS  60
   61 GIVCTNGRVT TLVLFGKSLS GYIPSELGLL NSLNRLDLAH NNFSKTIPVR LFEATKLRYI 120
  121 DLSHNSLSGP IPAQIKSMKS LNHLDFSSNH LNGSLPESLT ELGSLVGTLN FSFNQFTGEI 180
  181 PPSYGRFRVH VSLDFSHNNL TGKVPQVGSL LNQGPNAFAG NSHLCGFPLQ TPCEKIKTPN 240
  241 FVAAKPEGTQ ELQKPNPSVI SNDDAKEKKQ QITGSVTVSL ISGVSVVIGA VSLSVWLIRR 300
  301 KRSSDGYNSE TKTTTVVSEF DEEGQEGKFV AFDEGFELEL EDLLRASAYV IGKSRSGIVY 360
  361 RVVAAESSST VVAVRRLSDG NDTWRFKDFV NEVESIGRIN HPNIVRLRAY YYAEDEKLLI 420
  421 TDFINNGSLY SALHGGPSNT RPTLSWAERL CIAQGTARGL MYIHEYSSRK YVHGNLKSSK 480
  481 ILLDNELHPH VSGFGLTRLV SGYPKVTDHS LSSMTQSIDQ GFATRLSVSA PAAAYLAPEA 540
  541 RASSDCKLSH KCDVYSFGVI LLELLTGRLP YGSSENEGEE ELVNVLRKWH KEERSLAEIL 600
  601 DPKLLKQDFA NKQVIATIHV ALNCTEMDPD MRPRMRSVSE ILGRIK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle