YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQAPMPEFS SSVKLKYVKL GYQYLVNHFL SFLLIPIMAI VAVELLRMGP EEILNVWNSL  60
   61 QFDLVQVLCS SFFVIFISTV YFMSKPRTIY LVDYSCYKPP VTCRVPFATF MEHSRLILKD 120
  121 KPKSVEFQMR ILERSGLGEE TCLPPAIHYI PPTPTMDAAR SEAQMVIFEA MDDLFKKTGL 180
  181 KPKDVDILIV NCSLFSPTPS LSAMVINKYK LRSNIKSFNL SGMGCSAGLI SVDLARDLLQ 240
  241 VHPNSNAIIV STEIITPNYY QGNERAMLLP NCLFRMGAAA IHMSNRRSDR WRAKYKLSHL 300
  301 VRTHRGADDK SFYCVYEQED KEGHVGINLS KDLMAIAGEA LKANITTIGP LVLPASEQLL 360
  361 FLTSLIGRKI FNPKWKPYIP DFKLAFEHFC IHAGGRAVID ELQKNLQLSG EHVEASRMTL 420
  421 HRFGNTSSSS LWYELSYIES KGRMRRGDRV WQIAFGSGFK CNSAVWKCNR TIKTPKDGPW 480
  481 SDCIDRYPVF IPEVVKL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	61	0.83
Transmembrane Helix	62	82	0.92
Cytoplasmic	83	216	0.88
Transmembrane Helix	217	235	0.53
Non-Cytoplasmic	236	497	0.55