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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FH2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIPFCFLF VAFFFSSSTA DQRHHSRHLL HQPFFPVVTA APPPYQPPVS SQPPSPSPHT  60
   61 HHHHKKHLTT TTPPPHEKHL FSSVANPPPP PPSPPHPNPF FPSSDPTSTA SHPPPAPPPP 120
  121 ASLPTFPANI SSLLFPTHNK QSKPPSNGHI ARLVTITASV ISAAALLSLF AVFIIFIRRT 180
  181 RHRRRSSPAD DTKSTRSDAL QLFNASPSDG SKKQKQHQQP PKYTSSHTSS EFLYLGTLVN 240
  241 SRSNGLEQQK SPISLSGGIT GVLELPPPAS SSSSSSYSQY HKLGSPELRP LPPLPKLQSF 300
  301 TPVYKSTEQL NPKRQDFDGD DNENDEFFSP RGSSGRKQSP TRVSDVDQID NRSINGSGSN 360
  361 SCSPTNFAPS LNASPGTSLK PKSISPPVSL HSQISSNNGI PKRLCPARPP PPPPPPPQVS 420
  421 EVPATMSHSL PGDDSDPEKK VETMKPKLKT LHWDKVRASS SRVMVWDQIK SNSFQVNEEM 480
  481 IETLFKVNDP TSRTRDGVVQ SVSQENRFLD PRKSHNIAIL LRALNVTADE VCEALIEGNS 540
  541 DTLGPELLEC LLKMAPTKEE EDKLKELKDD DDGSPSKIGP AEKFLKALLN IPFAFKRIDA 600
  601 MLYIVKFESE IEYLNRSFDT LEAATGELKN TRMFLKLLEA VLKTGNRMNI GTNRGDAHAF 660
  661 KLDTLLKLVD IKGADGKTTL LHFVVQEIIK FEGARVPFTP SQSHIGDNMA EQSAFQDDLE 720
  721 LKKLGLQVVS GLSSQLINVK KAAAMDSNSL INETAEIARG IAKVKEVITE LKQETGVERF 780
  781 LESMNSFLNK GEKEITELQS HGDNVMKMVK EVTEYFHGNS ETHPFRIFAV VRDFLTILDQ 840
  841 VCKEVGRVNE RTVYGSMPLH SPSNQTATPL FPVVINNNSR LSPSGSLDDD DGSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle