YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAANEPVNG GSVQIRTENN ERRKLPNFLQ SVNMKYVKLG YHYLITHLFK LCLVPLMAVL  60
   61 VTEISRLTTD DLYQIWLHLQ YNLVAFIFLS ALAIFGSTVY IMSRPRSVYL VDYSCYLPPE 120
  121 SLQVKYQKFM DHSKLIEDFN ESSLEFQRKI LERSGLGEET YLPEALHCIP PRPTMMAARE 180
  181 ESEQVMFGAL DKLFENTKIN PRDIGVLVVN CSLFNPTPSL SAMIVNKYKL RGNVKSFNLG 240
  241 GMGCSAGVIS IDLAKDMLQV HRNTYAVVVS TENITQNWYF GNKKAMLIPN CLFRVGGSAI 300
  301 LLSNKGKDRR RSKYKLVHTV RTHKGAVEKA FNCVYQEQDD NGKTGVSLSK DLMAIAGEAL 360
  361 KANITTLGPL VLPISEQILF FMTLVTKKLF NSKLKPYIPD FKLAFDHFCI HAGGRAVIDE 420
  421 LEKNLQLSQT HVEASRMTLH RFGNTSSSSI WYELAYIEAK GRMKKGNRVW QIAFGSGFKC 480
  481 NSAVWVALNN VKPSVSSPWE HCIDRYPVKL DF

Type	Start	End	Confidence
Cytoplasmic	1	42	0.85
Transmembrane Helix	43	62	0.85
Non-Cytoplasmic	63	78	0.71
Transmembrane Helix	79	101	0.88
Cytoplasmic	102	236	0.82
Transmembrane Helix	237	254	0.43
Non-Cytoplasmic	255	285	0.60
Transmembrane Helix	286	303	0.32
Cytoplasmic	304	512	0.59