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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157823621, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.71
Topology Confidence: 0.23
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVAANHPN ASTVGLVLPP ASGTGGSRLL VGATYTGYGS AFFPRNRSLE DHRFENTPEI  60
   61 SIRSLDARGD LAKLFTFDLN PSDDNILKIK QGAKEQHKLG FVRAFLHPAV PPHSAHPYAY 120
  121 LALNSEARAG DKDSQARSLL ARICLPRGAG GDAKKLTESY IQLGLQCAGG AGRGDLYSRL 180
  181 VSVFPAREQF FAVFERPQGT PGARNAPAAL CAFRFADVQA AIRAARTACF LQPEQLDCGA 240
  241 AHLQHPLTIL QPLRASPVFR APGLTAVAVA NANNYTAVFL GTATGRLLKI SLNESMQVVS 300
  301 RRVLTVAYGE PVHHVMQFDP MDPGYLYLMT SHQMARVKVA ACEVHSTCGD CVGAADAYCG 360
  361 WCTLETRCTF KQDCANSSLP HFWTSASEGP SRCPAMTVLP SEIDVHRDYT GMILQISGSL 420
  421 PSLSGMEMAC DYGNGVRTVA RVPGPAYGHQ IAYCNLLPRA QFPPFPAGQD HVTVEMSVRV 480
  481 KGHNIVSANF TIYDCSRIGQ VYPHTACTSC LSTQWPCSWC IQLHSCVSNQ SRCQDSPNPT 540
  541 SPQDCPQIVP SPLAPVPTGG SQDILVPLTK AAFFHGTSLQ CSFGLEENFE AVWANDSLVR 600
  601 CNQVVLHTTQ KSQVFPLSLK LKGPPDRFLD SPNPMTVVVY NCAMGSPDCS QCLGREDLGH 660
  661 LCVWNDGCRL RGPLQPLSGT CPAPEIRAIE PLSGPLNGGT LLTIRGKNLG RRLSDVAHGV 720
  721 WIGNVACEPL ADRYTVSEEI VCATGPAPGA FSDVVTVNVS KEGRSREQFS YVLPRVHSLE 780
  781 PSMGPKAGGT RITIHGSDLN VGSMLQVLVN DTDPCTDLTR TATSITCTVP RGTLPSPVPV 840
  841 CVRFESRGCV HGNLTFWYMQ NPVITAISPG RSPVSGGRTI TVAGERFHMV QNVSMAVHHI 900
  901 GREPTFCKVL NSTLIICPSP GALSNASAPV DFFINGRAYA DEAAEELLDP AEAQRGSRFR 960
  961 LDYLPNPQFS TAKREKWIKH HPGEPLTLVI HKEQDSLGLE SHEYHIKIGQ VSCDIQIISD1020
 1021 RVIHCSVNES LGTAEGQLPI TIQVGNFNQT IATLQLGGSE TAIVVSIVIC SVLLLLSVVA1080
 1081 LFVFCTKSRR AERYWQKTLL QMEEMESQIR EEIRKGFAEL QTDMTDLTKE LNRSQGIPFL1140
 1141 EYKHFVTRTF FPKCSSLYEE RYVLPSKTLN SQGGSPPQET HPLLGEWNIP EHCRPSMEEG1200
 1201 ISLFSSLLNN KHFLIVFVHA LEQQKDFAVR DRCSLASLLT IALHGKLEYY TSIMKELLVD1260
 1261 LIDASAAKNP KLMLRRTESV VEKMLTNWMS ICMYGCLRET VGEPFFLLLC AIKQQINKGS1320
 1321 IDAITGKARY TLNEEWLLRE NIEAKPRNLN VSFQGCGMDS LSVRAMDTDT LTQVKEKILE1380
 1381 AFCKNVPYSQ WPRAEDVDLE WFASSTQSYV LRDLDDTSVV EDGRKKLNTL AHYKIPEGAS1440
 1441 LAMSLTDKKD NTLGRVKDLD TEKYFHLVLP TDELVEPKKS HRQSHRKKVL PEIYLTRLLS1500
 1501 TKGTLQKFLD DLFKAILSIR EDKPPLAVKY FFDFLEEQAE KRGISDPDTL HIWKTNSLPL1560
 1561 RFWVNILKNP QFVFDIEKTD HIDACLSVIA QAFIDACSIS DLQLGKDSPT NKLLYAKEIP1620
 1621 EYRKIVQRYY KQIQDMTPLS EQEMNAHLAE ESRKYQNEFN TNVAMAEIYK YAKRYRPQIM1680
 1681 AALEANPTAR RTQLQYKFEQ VVALMENNIY ECYSEA

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