YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	54	0.84
Non-Cytoplasmic	55	67	0.78
Transmembrane Helix	68	88	0.92
Cytoplasmic	89	102	0.86
Transmembrane Helix	103	122	0.96
Non-Cytoplasmic	123	139	0.86
Transmembrane Helix	140	158	0.91
Cytoplasmic	159	178	0.87
Transmembrane Helix	179	200	0.93
Non-Cytoplasmic	201	224	0.88
Transmembrane Helix	225	245	0.92
Cytoplasmic	246	282	0.97
Transmembrane Helix	283	303	0.92
Non-Cytoplasmic	304	334	0.93
Transmembrane Helix	335	356	0.89
Cytoplasmic	357	364	0.92
Transmembrane Helix	365	387	0.90
Non-Cytoplasmic	388	405	0.93
Transmembrane Helix	406	429	0.85
Cytoplasmic	430	441	0.63
Transmembrane Helix	442	459	0.89
Non-Cytoplasmic	460	474	0.73
Transmembrane Helix	475	496	0.93
Cytoplasmic	497	513	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAYETEKPT KDAAALETQS PEDFDQPSPL RKIISVASIA AGVQFGWALQ LSLLTPYVQL  60
   61 LGIPHKWSSL IWLCGPVSGM IVQPIVGFHS DRCRSKFGRR RPFIATGAAL VAVAVFLIGY 120
  121 AADFGYKMGD KLEEKVKVRA IGIFALGFWI LDVANNTLQG PCRAFLADLA AGDAKRTRVA 180
  181 NAFFSFFMAV GNVLGYAAGS YTNLHKMFPF TMTKACDIYC ANLKTCFFLS ITLLLIVTVT 240
  241 SLWYVNDKQW SPPPRNADDD EKTSSVPLFG EIFGAFKVMK RPMWMLLIVT ALNWIAWFPF 300
  301 LLFDTDWMGR EVFGGDSDGN ERSKKLYSLG VQSGAMGLMF NSIVLGFMSL GVEWIGRKLG 360
  361 GAKRLWGIVN FILAAGLAMT VLVTKFAEDH RKTAGDLAGP SASVKAGALS LFAVLGIPLA 420
  421 ITFSTPFALA SIFSSCSGAG QGLSLGVLNL AIVIPQMIVS LGGGPFDALF GGGNLPAFIV 480
  481 AAIAAAISGV LALTVLPSPP PDAPKATTMG GFH