YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S40A1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.93
Transmembrane Helix	37	53	0.71
Non-Cytoplasmic	54	70	0.61
Transmembrane Helix	71	93	0.83
Cytoplasmic	94	106	0.66
Transmembrane Helix	107	129	0.89
Non-Cytoplasmic	130	138	0.73
Transmembrane Helix	139	164	0.87
Cytoplasmic	165	197	0.79
Transmembrane Helix	198	222	0.77
Non-Cytoplasmic	223	228	0.53
Transmembrane Helix	229	247	0.79
Cytoplasmic	248	313	0.84
Transmembrane Helix	314	337	0.86
Non-Cytoplasmic	338	346	0.69
Transmembrane Helix	347	369	0.89
Cytoplasmic	370	380	0.72
Transmembrane Helix	381	400	0.87
Non-Cytoplasmic	401	405	0.65
Transmembrane Helix	406	429	0.76
Cytoplasmic	430	444	0.60
Transmembrane Helix	445	464	0.53
Non-Cytoplasmic	465	471	0.74
Transmembrane Helix	472	494	0.92
Cytoplasmic	495	524	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENETELRVV HQEEQQREEG EDESQPQNPP PALRRRFVIY LYVGYFLARW SARTWEFSVA  60
   61 LYMIHLWPNS LLLAAIYGAI ESGSTAIFGP IVGQWVEGMD YVKVLRLWLL FQNLSYTIAG 120
  121 GAVIKLLLVS DLKSRNLPVF AILIVLTNLA GAIGVLSTLA GTILIERDWA VVMSEGHPPA 180
  181 VLTKMNSVIR GIDLSSKLLS PVITGLIISF VSLKASAITF AAWATITAWV EYWLFISVYS 240
  241 GVPAITRSNE RRILRSRTKQ VEGRDAPVSV SIVPGTEEGY TGNPPSRTGI LVILDRMSKS 300
  301 SFVGAWRIYF NQEVVLPGVS LALLFFTVLS FGTLMTATLQ WEGIPTYIIG IGRGISATVG 360
  361 LAATLVYPLM QSRLSTLRTG LWSFWSQWSC LLVCVGSIWV KKDKIASYML MAGVAASRLG 420
  421 LWMFDLAVIQ QMQDLVSESD RCVVGGVQNS LQSALDLMAY LLGIIVSNPK DFWILTLISF 480
  481 STVSLAGMLY TIHLYRIRNH IFHLEKIPLL NKCIFKLLPS RGNV