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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25287703, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIGIVFFA SLLFLLIIFP SCAFAAITRA SPLSIGQTLS SPNGTYELGF FSPNNSRNQY  60
   61 VGIWFKNITP RVVVWVANRD KPVTNNAANL TINSNGSLIL VEREQNVVWS IGETFSSNEL 120
  121 RAELLENGNL VLIDGVSERN LWESFEHLGD TMLLESSVMY DVPNNKKRVL SSWKNPTDPS 180
  181 PGEFVAELTT QVPPQGFIMR GSRPYWRGGP WARVRFTGIP EMDGSHVSKF DISQDVAAGT 240
  241 GSLTYSLERR NSNLSYTTLT SAGSLKIIWN NGSGWVTDLE APVSSCDVYN TCGPFGLCIR 300
  301 SNPPKCECLK GFVPKSDEEW NKRNWTGGCM RRTNLSCDVN SSATAQANNG DIFDIVANVK 360
  361 PPDFYEYLSL INEEDCQQRC LGNCSCTAFS YIEQIGCLVW NRELVDVMQF VAGGETLSIR 420
  421 LASSELAGSN RVKIIVASIV SISVFMILVF ASYWYWRYKA KQNDSNPIPL ETSQDAWREQ 480
  481 LKPQDVNFFD MQTILTITNN FSMENKLGQG GFGPVYKGNL QDGKEIAIKR LSSTSGQGLE 540
  541 EFMNEIILIS KLQHRNLVRL LGCCIEGEEK LLIYEFMANK SLNTFIFGQS LILTNLFLIW 600
  601 LDSTKKLELD WPKRFEIIQG IACGLLYLHR DSCLRVVHRD MKVSNILLDE EMNPKISDFG 660
  661 LARMFQGTQH QANTRRVVGT LGYMSPEYAW TGMFSEKSDI YAFGVLLLEI ITGKRISSFT 720
  721 IGEEGKTLLE FAWDSWCESG GSDLLDQDIS SSGSESEVAR CVQIGLLCIQ QQAGDRPNIA 780
  781 QVMSMLTTTM DLPKPKQPVF AMQVQESDSE SKTMYSVNNI TQTAIVGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle