YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRR1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAVRNMKFG IFLLWWGWVL AAESTVHWPG REVHEPSKKG SRPQRQRRGA HDDAHKQGSP  60
   61 ILKRSSDITK SPLTKSEQLL RIDDHDFSMR PGFGGPAIPV GVDVQVESLD SISEVDMDFT 120
  121 MTLYLRHYWK DERLSFPSTN NLSMTFDGRL VKKIWVPDMF FVHSKRSFIH DTTTDNVMLR 180
  181 VQPDGKVLYS LRVTVTAMCN MDFSRFPLDT QTCSLEIESY AYTEDDLMLY WKKGNDSLKT 240
  241 DERISLSQFL IQEFHTTTKL AFYSSTGWYN RLYINFTLRR HIFFFLLQTY FPATLMVMLS 300
  301 WVSFWIDRRA VPARVPLGIT TVLTMSTIIT GVNASMPRVS YIKAVDIYLW VSFVFVFLSV 360
  361 LEYAAVNYLT TVQERKERKL REKISCTCGL PQPRGVMLDS SYSDGEVNDL GGYMPENGEK 420
  421 PDRMMVQLTL ASERGSPQRK SQRGSYVSMR INTHAIDKYS RIIFPAAYIL FNLIYWSIFS 480
  481

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	283	0.99
Transmembrane Helix	284	305	0.92
Cytoplasmic	306	314	0.82
Transmembrane Helix	315	336	0.88
Non-Cytoplasmic	337	346	0.88
Transmembrane Helix	347	371	0.89
Cytoplasmic	372	458	0.99
Transmembrane Helix	459	479	0.88
Non-Cytoplasmic	480	480	0.94