YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10177728
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIISCITIH IFRNILFAIL IFYGSCYCDK GTILISYKYN LILVYISIFF FFLVKLETTF  60
   61 MKDATLAPKN ASFDYIIIGG GTAGCALAAT LSQNASVLVL ERGGSPYENP TATDMGNSVN 120
  121 TLLNNTPNSW SQLFISEDGV YNTRPRVLGG GSVINGGFYS RAGNDYVEEA EWEMEEVEAA 180
  181 YEWVEKKLVF EPQVIEWQKA FKDGLLEAGE SPDNGFTYDH IYGTKIGGTI FDRAGHRHTA 240
  241 ANLLEYANPN RIVVYLHASV HKVLFTTEEK PKAYEVLFED ANGVFHKANL ANKATNEVIL 300
  301 SAGALGSPQL LMLSGVGPAV HLEAHGVNPL VLDQPMVGQG MADNPMNFVA IPSPQPVELS 360
  361 LIQAVGITKF DSYIEGLSGL SLSFDITRRF FDGVLNLLNE TSHTTSRKIL TQSIAVLLKS 420
  421 FDVKLEVRMN GGLIFQKVDG PASKGHMKLR NTNPRDNPSV TFNYYQEPED LNKCVKGLNT 480
  481 IIRMINSKAF SKYKYPGVTA RELLNLMLAL PINLRPRHVT SAFNLKQFCI DTVTSVWHYH 540
  541 GGCQVGKVVD KNYKVLGIDG LRVIDGSTFL KSPGTNPQAT VMMLGR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	27	0.90
Non-Cytoplasmic	28	34	0.70
Transmembrane Helix	35	56	0.84
Cytoplasmic	57	70	0.87
Transmembrane Helix	71	91	0.90
Non-Cytoplasmic	92	586	0.98