YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMN7_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	277	0.99
Transmembrane Helix	278	300	0.89
Cytoplasmic	301	342	0.95
Transmembrane Helix	343	366	0.91
Non-Cytoplasmic	367	375	0.79
Transmembrane Helix	376	395	0.95
Cytoplasmic	396	414	0.89
Transmembrane Helix	415	435	0.95
Non-Cytoplasmic	436	444	0.81
Transmembrane Helix	445	466	0.91
Cytoplasmic	467	498	0.89
Transmembrane Helix	499	521	0.88
Non-Cytoplasmic	522	531	0.75
Transmembrane Helix	532	557	0.89
Cytoplasmic	558	566	0.87
Transmembrane Helix	567	588	0.92
Non-Cytoplasmic	589	608	0.83
Transmembrane Helix	609	630	0.94
Cytoplasmic	631	641	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTKGSSFR FYATLLLSFL SFSLSRAFYL PGVAPRDFQK GDPLYVKVNK LSSTKTQLPY  60
   61 DYYYLNYCKP PKILNNAENL GEVLRGDRIE NSVYTFQMLE DQPCKVGCRV KLNADSTKNF 120
  121 KEKIDDEYRA NMILDNLPVA VLRQRRDGSQ STTYEHGFRV GFKGSYEGSK EEKYFIHNHL 180
  181 SFRVMYHRDQ ESDSARIVGF EVTPNSILHE YKEWDEKNPQ LTTCNKDTKN LIQGNTVPQE 240
  241 VEQGKEIVFT YDVSFKESEI KWASRWDTYL LMNDDQIHWF SIINSLMIVL FLSGMVAMIM 300
  301 MRTLYKDISN YNQLETQDEA QEETGWKLVH GDVFRPPVNS GLLCVYVGTG VQIFGMSLVT 360
  361 MMFALLGFLS PSNRGGLMTA MVLLWVFMGI FAGYSSSRLH KMFKGNKWKR MTLKTAFMFP 420
  421 GILFAIFFVL NALIWGEQSS GAIPFGTMFA LFCLWFGISV PLVFVGSYLG YKKPAIEDPV 480
  481 KTNKIPRQVP EQPWYMKPVF SILIGGILPF GAVFIELFFI LTSIWLNQFY YIFGFLFIVF 540
  541 LILIVTCAEI TVVLCYFQLC SEDYNWWWRA YLTAGSSAFY LFLYSIFYFF TKLEITKLVS 600
  601 GMLYFGYMII ISYAFFVLTG TIGFYACFWF VRKIYSSVKI D