YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15239215, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.88
Transmembrane Helix	12	34	0.87
Cytoplasmic	35	42	0.87
Transmembrane Helix	43	64	0.87
Non-Cytoplasmic	65	71	0.77
Transmembrane Helix	72	94	0.92
Cytoplasmic	95	104	0.82
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	143	0.89
Transmembrane Helix	144	163	0.93
Cytoplasmic	164	232	0.92
Transmembrane Helix	233	253	0.84
Non-Cytoplasmic	254	272	0.80
Transmembrane Helix	273	293	0.81
Cytoplasmic	294	306	0.75
Transmembrane Helix	307	327	0.89
Non-Cytoplasmic	328	340	0.75
Transmembrane Helix	341	361	0.78
Cytoplasmic	362	369	0.73
Transmembrane Helix	370	393	0.89
Non-Cytoplasmic	394	395	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLELLEVA SMPIVQVLLI SVLGAFLATD YCSLLSADTR RSVNKLVFVV FTPCIMFANL  60
   61 AETVTLQDII SWWFMPINVG ITFLVGGILG WLVVKLLNPK PQLHGLIIAT CASGNMGNLM 120
  121 LILVPAICDE EGSPFGNRSV CRSIGLSYAS FSMALGGFYI WTYSYQLVRS SATQFRALEA 180
  181 AGLVKSPNKD IDSDPHALLL KPHQNQDLEI QGKQKVSTRT YIKDLLHQIL EELFAPPTIG 240
  241 AILGFVFGAT NWLRNLIIGE NAPLRVIQDS VKLLGEGTIP CITLILGGNL IQGLRSSAVK 300
  301 KSVIVGVIIV RYILLPVVGV GVVQLAGNLG YLPPDPLFRY VLMLQFALPP AMNISTMAQL 360
  361 FDVAQDECSV IFLWTYLVAS LALTVWSTIF LSILS