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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149043032, gi...
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDPAVPTGS FMMVNSSGRA SGQKAHLLLP TLKENDTHCI DFHYYFSSRD RSSPGALNVY  60
   61 VKVNGGPQGN PVWNVSGVVT EGWVKAELAI STFWPHFYQV IFESVSLKGH PGYIAVDEVR 120
  121 VLAHPCRKAP HFLRLQNVEV NVGQNATFQC IAGGKWSQHD KLWLQQWNGR DTALMVTRVV 180
  181 NHRRFSATVS VADTSQRSVS KYRCVIRSDG GSGVSNYAEL IVKEPPTPIA PPELLAVGAT 240
  241 YLWIKPNANS IIGDGPIILK EVEYRTTTGT WAETHIVDSP NYKLWHLDPD VEYEIRVLLT 300
  301 RPGEGGTGPP GPPLTTRTKC AVPGAVPLES IQGGPFEEKI YIQWKPPNET NGVITLYEIN 360
  361 YKAVGSLDPS ADLSSQRGKV FKLRNETHHL FVGLYPGTTY SFTIKASTAK GFGPPVTTRI 420
  421 ATKISAPSMP EYDADSPLNE TDTTITVMLK PAQSRGAPVS VYQLVVKEER LQKSRRAADI 480
  481 IECFSVPVSY RNASNLDSLH YFAAELKPSN LPVTQPFTVG DNKTYNGYWN PPLSPLKSYS 540
  541 IYFQALSKAN GETKINCVRL ATKGASTQNS NTVEPEKQVD NTVKMAGVIA GLLMFIIILL 600
  601 GVMLTIKRRK LAKKQKETQS GAQREMGPVA STDKPTTKLS TNRNDEGFSS SSQDVNGFTD 660
  661 GSRGELSQPT LTIQTHPYRT CDPVEMSYPR DQFQPAIRVA DLLQHITQMK RGQGYGFKEE 720
  721 YEALPEGQTA SWDTAKEDEN RNKNRYGNII SYDHSRVRLL VLDGDPHSDY INANYIDGYH 780
  781 RPRHYIATQG PMQETVKDFW RMIWQENSAS IVMVTNLVEV GRVKCVRYWP DDTEVYGDIK 840
  841 VTLIETEPLA EYVIRTFTVQ KKGYHEIREL RLFHFTSWPD HGVPCYATGL LGFVRQVKFL 900
  901 NPPEAGPIVV HCSAGAGRTG CFIAIDTMLD MAENEGVVDI FNCVRELRAQ RVNLVQTEEQ 960
  961 YVFVHDAILE ACLCGNTAIP VCEFRSLYYN ISRLDPQTNS SQIKDEFQTL NIVTPRVRPE1020
 1021 DCSIGLLPRN HDKNRSMDVL PLDRCLPFLI SVDGESSNYI NAALMDSHKQ PAAFVVTQHP1080
 1081 LPNTVADFWR LVFDYNCSSV VMLNEMDTAQ LCMQYWPEKT SGCYGPIQVE FVSADIDEDI1140
 1141 IHRIFRICNM ARPQDGYRIV QHLQYIGWPA YRDTPPSKRS LLKAVRRLEK WQEEYDGREG1200
 1201 RTVVHCLNGG GRSGTFCAIC SVCEMIQQQN IIDVFHIVKT LRNNKSNMVE TLEQYKFVYE1260
 1261 VALEYLSSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle