YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLGG1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.69
Transmembrane Helix	94	113	0.90
Non-Cytoplasmic	114	123	0.57
Transmembrane Helix	124	149	0.80
Cytoplasmic	150	161	0.56
Transmembrane Helix	162	182	0.69
Non-Cytoplasmic	183	192	0.71
Transmembrane Helix	193	214	0.91
Cytoplasmic	215	236	0.82
Transmembrane Helix	237	257	0.91
Non-Cytoplasmic	258	266	0.67
Transmembrane Helix	267	286	0.85
Cytoplasmic	287	292	0.87
Transmembrane Helix	293	315	0.91
Non-Cytoplasmic	316	334	0.92
Transmembrane Helix	335	356	0.91
Cytoplasmic	357	368	0.85
Transmembrane Helix	369	388	0.87
Non-Cytoplasmic	389	423	0.71
Transmembrane Helix	424	445	0.89
Cytoplasmic	446	453	0.76
Transmembrane Helix	454	474	0.72
Non-Cytoplasmic	475	481	0.58
Transmembrane Helix	482	503	0.88
Cytoplasmic	504	512	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLLATPIF SPLASSPARN RLSCSKIRFG SKNGKILNSD GAQKLNLSKF RKPDGQRFLQ  60
   61 MGSSKEMNFE RKLSVQAMDG AGTGNTSTIS RNVIAISHLL VSLGIILAAD YFLKQAFVAA 120
  121 SIKFPSALFG MFCIFSVLMI FDSVVPAAAN GLMNFFEPAF LFIQRWLPLF YVPSLVVLPL 180
  181 SVRDIPAASG VKICYIVAGG WLASLCVAGY TAIAVRKMVK TEMTEAEPMA KPSPFSTLEL 240
  241 WSWSGIFVVS FVGALFYPNS LGTSARTSLP FLLSSTVLGY IVGSGLPSSI KKVFHPIICC 300
  301 ALSAVLAALA FGYASGSGLD PVLGNYLTKV ASDPGAGDIL MGFLGSVILS FAFSMFKQRK 360
  361 LVKRHAAEIF TSVIVSTVFS LYSTALVGRL VGLEPSLTVS ILPRCITVAL ALSIVSLFEG 420
  421 TNSSLTAAVV VVTGLIGANF VQVVLDKLRL RDPIARGIAT ASSAHGLGTA ALSAKEPEAL 480
  481 PFCAIAYALT GIFGSLLCSV PAVRQSLLAV VG