YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR29_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.70
Transmembrane Helix	5	23	0.91
Non-Cytoplasmic	24	32	0.61
Transmembrane Helix	33	51	0.92
Cytoplasmic	52	61	0.57
Transmembrane Helix	62	83	0.91
Non-Cytoplasmic	84	94	0.66
Transmembrane Helix	95	114	0.91
Cytoplasmic	115	133	0.78
Transmembrane Helix	134	155	0.92
Non-Cytoplasmic	156	161	0.74
Transmembrane Helix	162	184	0.82
Cytoplasmic	185	278	0.94
Transmembrane Helix	279	300	0.86
Non-Cytoplasmic	301	314	0.81
Transmembrane Helix	315	332	0.58
Cytoplasmic	333	355	0.60
Transmembrane Helix	356	376	0.89
Non-Cytoplasmic	377	395	0.60
Transmembrane Helix	396	419	0.74
Cytoplasmic	420	434	0.60
Transmembrane Helix	435	458	0.90
Non-Cytoplasmic	459	477	0.64
Transmembrane Helix	478	498	0.91
Cytoplasmic	499	521	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLSWAFTV AWFTLWMLML YLTNEMKLKF TDAAAIVNVF AGVSAIGHLG MQFLVDAFIG  60
   61 HFWMLCLSTL AFSFGFGFLA ISASPILSGN GQKGLFYVAL TVISVGIFGR SISLGVFTED 120
  121 QLEDGRNKGN PAKLVSFVIG NVGNFVFLLL AAIAMPQISP WFVRFTIPSG CEVLAMLIFI 180
  181 SGACSYKRVK PGGSPLTTVF RVFMASASKM SCAYSNNSSQ LYEKAECDQD IKPHTSSLRY 240
  241 LDRAAMILQT ESLEQQRKNR WKLCRVTEVE QTKSVIRTVP LFATSLISGI VFSLGNTFFL 300
  301 EQANHMDSKF GSWNLPLPLL LLFSEAARLG SRELCVMAAK RHAIDFPESP KQTKTPYGIP 360
  361 VSIILSIFCC SIAAHVESRR LKVVSTQGLL HETVPMSVFW LLPQYILLGS ITGIYENSFA 420
  421 LYLEETVPEE LSQYMVLLNV GVCGVGIMSN IALVSLVGSV SGGKWFQDTI NKSRVDNYYW 480
  481 VITVFCMFNL LLYFIVTYRY TVCNKKDGAT QENDRRIIAS V