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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157823725, gi...
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVTKKSMRD GTEVTERIVT ETVTTRLTSL PPKGSTSNGY TKTGSLGGGS RLEKQSLTHG  60
   61 SSGYINSSGS LRGNASTSSY RRAHSPASTL PNSPGSTFER KTHMSRHGTY EGSSSGNSSP 120
  121 EYPRKELASS STRGRSQTRE SEIRVRLQSA SPSTRWTELD EVKRLLKGSR SASASPTRNT 180
  181 SNTLPIPKKG TVETKTVTAS SHSVSGTYDS TILDSNFPPH MWSSTLPAGS SMGTYHNNIA 240
  241 TQSTSLVNTN AYSAGSVFGV PNNMASCSPT LHPGLSSCSS VFGMQNNLAP CSSVLSHGTT 300
  301 TASTAYGVKK NVPQPPTVTS TGVSTSAACT TSVQSDDLLH KDCKFLILEK DNVPAKKEME 360
  361 LLIMSKDSGK VFTASPASIS STSFSEDTLK KEKQAAYAAD TCLKADVNGD LNTVSTKSKA 420
  421 ISAENHSYDR GVGGGRGKSG VAGGGGGGGG GGSGGGTWGA APAWCPCGSC CSWWKWLLGL 480
  481 LLTWLLLLGL LFGLIALAEE VRKLKARVEE LEKTKVLYHD IVKTDRSSRD RLQGEAPSLG 540
  541 PGLSKAEMDD YGQEAIWLFV RNKLMTEQEN GNLRGSPGPK GDTGSQGPKD RGLPGIPGTP 600
  601 GPLGHPGPEG PKGQKGSIGD PGMEGPIGQR GLAGPMGPPG EPGPPGSGEK GDRGIAGEQG 660
  661 PRGLPGVPGS PGLRGTSGSP GPQGPPGSVG PQGLRGEVGL PGVKGDKGLV GPPGPKGDQG 720
  721 EKGPRGLTGE PGIRGLPGAV GEPGAKGAMG PAGPDGQQGS RGEQGLTGMP GARGPPGPTG 780
  781 DPGKPGLTGP QGPQGLPGTP GRPGTKGEPG APGRVMTSEG SSAITVPGPP GPPGAMGPPG 840
  841 PPGTPGPAGP AGLPGQQGPR GEPGLAGDSF LNSGSSISEV LSAQGVDFRG PPGPPGPRGP 900
  901 PGPSIPGPPG PRGPPGEGVP GPPGPPGSFL TDSETFFSGP PGPPGPPGPK GDQGDPGVPG 960
  961 TPGIPGGLSH GTSSGTMYAQ GPPGPPGPPG PPGSLSSSGQ ELQRYIAEYM QSDNIRTYLS1020
 1021 GVQGPPGPPG PPGPVITITG ETFDYSQLAS QVVSYLRSSG YGVGLSSASS SEDILAMLRR1080
 1081 NDVWQYLRQH LVGPPGPPGP PGVSGDGSLL SLDYGELSRH ILNYMSSSGI SFGHPGPPGP1140
 1141 PGLPGTSYEE LLTMLRAAGL SSIAGPPGPP GPPGPRGPPG VSAALATYAA ENSDNFRSEL1200
 1201 ISYLTSPDVR SFIVGPPGPP GPQGPPGDYN WGSGSSARRG TSYSSSMGTG RTNGGSLGEG1260
 1261 GAFGAGDGGP YGTDVGPGGG YGAAAGGGVY GTNGESFRGS FTGDLDYNTL ALRVSESMQR1320
 1321 QGLLQGMAYT VQGPPGPQGP PGISKVFSAY SNVTQDLMDF FRTYGAIPGP PGQKGDMGTP1380
 1381 GPKGDRGPAG PRGPPGPPGP RGNKGEKGDK GDQVYTGRRK RSIAIKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle