YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.59
Transmembrane Helix	53	74	0.87
Cytoplasmic	75	80	0.54
Transmembrane Helix	81	99	0.51
Non-Cytoplasmic	100	116	0.67
Transmembrane Helix	117	136	0.86
Cytoplasmic	137	149	0.71
Transmembrane Helix	150	171	0.93
Non-Cytoplasmic	172	189	0.73
Transmembrane Helix	190	210	0.86
Cytoplasmic	211	221	0.69
Transmembrane Helix	222	244	0.85
Non-Cytoplasmic	245	268	0.79
Transmembrane Helix	269	291	0.86
Cytoplasmic	292	302	0.77
Transmembrane Helix	303	324	0.88
Non-Cytoplasmic	325	328	0.67
Transmembrane Helix	329	351	0.63
Cytoplasmic	352	357	0.53
Transmembrane Helix	358	379	0.73
Non-Cytoplasmic	380	386	0.52
Transmembrane Helix	387	410	0.86
Cytoplasmic	411	416	0.61
Transmembrane Helix	417	439	0.86
Non-Cytoplasmic	440	822	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFGDNKMF YMRDTWREGT MICDVLPINP SSNGVWPQQK FSDPNINVHF WNYAFPHLQM  60
   61 IFLIISFLWQ FLHFFLRRLG MIRFTSHMLT GVLLSKSFLK ENSAARRFFS TEDYKEIVFS 120
  121 LTAACSYMMF WFLMGVKMDT GLIRTTGRKA ITIGLSSVLL STLVCSVIFF GNLRDVGTKN 180
  181 SDHTLNSLEY VVIYSIQCLS SFPVVGNLLF ELRLQNSELG RLAISSAVIS DFSTSILASV 240
  241 LIFMKELKDE QTRLGSVFIG DVIAGNRPLM RAGIVVLFVC IAIYVFRPLM FYIIKQTPSG 300
  301 RPVKAIYLST IIVMVSGSAI LANWCKQSIF MGPFILGLAV PHGPPLGSAI IQKYESAIFG 360
  361 TFLPFFIASS STEIDISALF GWEGLNGIIL IMVTSFVVKF IFTTVPALFY GMPMEDCFAL 420
  421 SLIMSFKGIF ELGAYALAYQ RGSVRPETFT VACLYITLNS AIIPPILRYL YDPSRMYAGY 480
  481 EKRNMQHLKP NSELRILSCI YRTDDISPMI NLLEAICPSR ESPVATYVLH LMELVGQANP 540
  541 IFISHKLQTR RTEETSYSNN VLVSFEKFRK DFYGSVFVST YTALSMPDTM HGDICMLALN 600
  601 NTTSLILLPF HQTWSADGSA LISNNNMIRN LNKSVLDVAP CSVGVFVYRS SSGRKNISSG 660
  661 RKTINGTVPN LSSYNICMIF LGGKDDREAV TLATRMARDP RINITIVRLI TTDEKARENT 720
  721 VWDKMLDDEL LRDVKSNTLV DIFYSEKAIE DAAETSSLLR SMVSDFDMFI VGRGNGRTSV 780
  781 FTEGLEEWSE FKELGIIGDL LTSQDFNCQA SVLVIQQQQL MI