YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALS9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	490	0.80
Transmembrane Helix	491	511	0.90
Cytoplasmic	512	560	0.67
Transmembrane Helix	561	580	0.94
Non-Cytoplasmic	581	591	0.69
Transmembrane Helix	592	613	0.91
Cytoplasmic	614	681	0.72
Transmembrane Helix	682	704	0.86
Non-Cytoplasmic	705	736	0.58
Transmembrane Helix	737	751	0.45
Cytoplasmic	752	752	0.04
Transmembrane Helix	753	770	0.77
Non-Cytoplasmic	771	1498	0.69
Transmembrane Helix	1499	1522	0.88
Cytoplasmic	1523	1550	0.65
Transmembrane Helix	1551	1574	0.75
Non-Cytoplasmic	1575	1580	0.65
Transmembrane Helix	1581	1602	0.85
Cytoplasmic	1603	1642	0.86
Transmembrane Helix	1643	1662	0.88
Non-Cytoplasmic	1663	1668	0.81
Transmembrane Helix	1669	1691	0.90
Cytoplasmic	1692	1744	0.89
Transmembrane Helix	1745	1763	0.80
Non-Cytoplasmic	1764	1774	0.80
Transmembrane Helix	1775	1796	0.92
Cytoplasmic	1797	1807	0.89
Transmembrane Helix	1808	1829	0.92
Non-Cytoplasmic	1830	1836	0.73
Transmembrane Helix	1837	1858	0.92
Cytoplasmic	1859	1876	0.89
Transmembrane Helix	1877	1899	0.92
Non-Cytoplasmic	1900	1931	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRAESSWER LVNAALRRDR TGGVAGGNQS SIVGYVPSSL SNNRDIDAIL RAADEIQDED  60
   61 PNIARILCEH GYSLAQNLDP NSEGRGVLQF KTGLMSVIKQ KLAKREVGTI DRSQDILRLQ 120
  121 EFYRLYREKN NVDTLKEEEK QLRESGAFTD ELERKTVKRK RVFATLKVLG SVLEQLAKEI 180
  181 PEELKHVIDS DAAMSEDTIA YNIIPLDAPV TTNATTTFPE VQAAVAALKY FPGLPKLPPD 240
  241 FPIPATRTAD MLDFLHYIFG FQKDSVSNQR EHIVLLLANE QSRLNIPEET EPKLDDAAVR 300
  301 KVFLKSLENY IKWCDYLCIQ PAWSNLEAIN GDKKLLFLSL YFLIWGEAAN IRFLPECLCY 360
  361 IFHHMVREMD EILRQQVARP AESCMPVDSR GSDDGVSFLD HVIAPLYGVV SAEAFNNDNG 420
  421 RAPHSAWRNY DDFNEYFWSL HSFELGWPWR TSSSFFQKPI PRKKLKTGRA KHRGKTSFVE 480
  481 HRTFLHLYHS FHRLWIFLAM MFQALAIIAF NKDDLTSRKT LLQILSLGPT FVVMKFSESV 540
  541 LEVIMMYGAY STTRRLAVSR IFLRFIWFGL ASVFISFLYV KSLKAPNSDS PIVQLYLIVI 600
  601 AIYGGVQFFF SILMRIPTCH NIANKCDRWP VIRFFKWMRQ ERHYVGRGMY ERTSDFINLL 660
  661 PINFNDYYTV VFLLVWEKQQ TYLYLLFWLV VLSAKFSFAY FLQIKPLVGP TRMIVKQNNI 720
  721 PYSWHDFVSR KNYNALTVAS LWAPVVAIYL LDIHIFYTIF SAFLGFLLGA RDRLGEIRSL 780
  781 EAIHKLFEEF PGAFMRALHV PLTNRQGDWH VISSHYCCSY LHVIINSKTV DKKNKVDAAH 840
  841 FAPFWNQIIK SLREEDYITD FEMELLLMPK NSGRLELVQW PLFLLSSKIL LAKEIAAESN 900
  901 SQEEILERIE RDDYMKYAVE EVYHTLKLVL TETLEAEGRL WVERIYEDIQ TSLKERNIHH 960
  961 DFQLNKLSLV ITRVTALLGI LKENETPEHA KGAIKALQDL YDVMRLDILT FNMRGHYETW1020
 1021 NLLTQAWNEG RLFTKLKWPK DPELKALVKR LYSLFTIKDS AAHVPRNLEA RRRLQFFTNS1080
 1081 LFMDVPPPKS VRKMLSFSVF TPYYSEVVLY SMAELTKRNE DGISILFYLQ KIYPDEWKNF1140
 1141 LARIGRDENA LEGDLDNERD ILELRFWASY RGQTLARTVR GMMYYRKALM LQSYLERKAG1200
 1201 NDATDAEGFE LSPEARAQAD LKFTYVVTCQ IYGRQKEDQK PEAVDIALLM QRNEALRIAY1260
 1261 IDVVDSPKEG KSHTEYYSKL VKADISGKDK EIYSIKLPGD PKLGEGKPEN QNHAIVFTRG1320
 1321 NAIQTIDMNQ DNYFEEALKM RNLLEEFDRD HGIRPPTILG VREHVFTGSV SSLASFMSNQ1380
 1381 ETSFVTLGQR VLAKPLKIRM HYGHPDVFDR VFHITRGGIS KASRVINISE DIFAGFNTTL1440
 1441 RQGNVTHHEY IQVGKGRDVG LNQIALFEGK VAGGNGEQVL SRDVYRLGQL LDFFRMMSFF1500
 1501 FTTVGFYLCT MLTVLTVYIF LYGRAYLALS GVGATIRERA ILLDDTALSA ALNAQFLFQI1560
 1561 GVFTAVPMVL GFILEQGFLQ AIVSFITMQF QLCTVFFTFS LGTRTHYFGR TILHGGARYQ1620
 1621 ATGRGFVVKH IKFSENYRLY SRSHFVKAME VILLLVVYLA YGNDEAGAVS YILLTVSSWF1680
 1681 LAVSWLFAPY LFNPAGFEWQ KVVEDFKEWT NWLFYRGGIG VKGAESWEAW WEEELSHIRT1740
 1741 LSGRIMETIL SLRFFIFQYG IVYKLKLQGS DTSFAVYGWS WVAFAMIIVL FKVFTFSQKI1800
 1801 SVNFQLLLRF IQGLSLLMAL AGIIVAVVLT PLSVTDIFAC VLAFIPTGWG ILSIACAWKP1860
 1861 VLKRMGMWKS IRSLARLYDA LMGMLIFLPV ALCSWFPFVS TFQTRMMFNQ AFSRGLEISL1920
 1921 ILAGDNPNSG L