YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79314019, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.95
Transmembrane Helix	45	66	0.87
Non-Cytoplasmic	67	72	0.67
Transmembrane Helix	73	95	0.88
Cytoplasmic	96	119	0.91
Transmembrane Helix	120	141	0.88
Non-Cytoplasmic	142	166	0.90
Transmembrane Helix	167	189	0.89
Cytoplasmic	190	199	0.81
Transmembrane Helix	200	222	0.90
Non-Cytoplasmic	223	239	0.91
Transmembrane Helix	240	261	0.92
Cytoplasmic	262	279	0.89
Transmembrane Helix	280	300	0.94
Non-Cytoplasmic	301	329	0.93
Transmembrane Helix	330	349	0.91
Cytoplasmic	350	366	0.88
Transmembrane Helix	367	387	0.93
Non-Cytoplasmic	388	393	0.78
Transmembrane Helix	394	415	0.92
Cytoplasmic	416	426	0.91
Transmembrane Helix	427	447	0.91
Non-Cytoplasmic	448	460	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG  60
   61 IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA GKNRSYGGLM GGSFGNPGRI 120
  121 LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL 180
  181 GVFAPLACFK RIDSLKFTSA LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS 240
  241 FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF 300
  301 GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR 360
  361 SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT AAVCLGFIFP ASIILKDRHD 420
  421 KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE