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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: BAME3_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKIFTFFL ILSSISPLLC SSLISPLNLS LIRQANVLIS LKQSFDSYDP SLDSWNIPNF  60
   61 NSLCSWTGVS CDNLNQSITR LDLSNLNISG TISPEISRLS PSLVFLDISS NSFSGELPKE 120
  121 IYELSGLEVL NISSNVFEGE LETRGFSQMT QLVTLDAYDN SFNGSLPLSL TTLTRLEHLD 180
  181 LGGNYFDGEI PRSYGSFLSL KFLSLSGNDL RGRIPNELAN ITTLVQLYLG YYNDYRGGIP 240
  241 ADFGRLINLV HLDLANCSLK GSIPAELGNL KNLEVLFLQT NELTGSVPRE LGNMTSLKTL 300
  301 DLSNNFLEGE IPLELSGLQK LQLFNLFFNR LHGEIPEFVS ELPDLQILKL WHNNFTGKIP 360
  361 SKLGSNGNLI EIDLSTNKLT GLIPESLCFG RRLKILILFN NFLFGPLPED LGQCEPLWRF 420
  421 RLGQNFLTSK LPKGLIYLPN LSLLELQNNF LTGEIPEEEA GNAQFSSLTQ INLSNNRLSG 480
  481 PIPGSIRNLR SLQILLLGAN RLSGQIPGEI GSLKSLLKID MSRNNFSGKF PPEFGDCMSL 540
  541 TYLDLSHNQI SGQIPVQISQ IRILNYLNVS WNSFNQSLPN ELGYMKSLTS ADFSHNNFSG 600
  601 SVPTSGQFSY FNNTSFLGNP FLCGFSSNPC NGSQNQSQSQ LLNQNNARSR GEISAKFKLF 660
  661 FGLGLLGFFL VFVVLAVVKN RRMRKNNPNL WKLIGFQKLG FRSEHILECV KENHVIGKGG 720
  721 RGIVYKGVMP NGEEVAVKKL LTITKGSSHD NGLAAEIQTL GRIRHRNIVR LLAFCSNKDV 780
  781 NLLVYEYMPN GSLGEVLHGK AGVFLKWETR LQIALEAAKG LCYLHHDCSP LIIHRDVKSN 840
  841 NILLGPEFEA HVADFGLAKF MMQDNGASEC MSSIAGSYGY IAPEYAYTLR IDEKSDVYSF 900
  901 GVVLLELITG RKPVDNFGEE GIDIVQWSKI QTNCNRQGVV KIIDQRLSNI PLAEAMELFF 960
  961 VAMLCVQEHS VERPTMREVV QMISQAKQPN TF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle