YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL  60
   61 AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG LTVYVMTRPR PVYLVDFSCY 120
  121 LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA 180
  181 AAREEAEQVM FGALDNLFAN TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS 240
  241 YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG 300
  301 GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA 360
  361 GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP YIPDFKLAFE HFCIHAGGRA 420
  421 VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS 480
  481 GFKCNSAIWE ALRHVKPSNN SPWEDCIDKY PVTLSY

Type	Start	End	Confidence
Cytoplasmic	1	43	0.89
Transmembrane Helix	44	66	0.87
Non-Cytoplasmic	67	82	0.79
Transmembrane Helix	83	105	0.89
Cytoplasmic	106	239	0.87
Transmembrane Helix	240	258	0.54
Non-Cytoplasmic	259	289	0.66
Transmembrane Helix	290	307	0.37
Cytoplasmic	308	516	0.62