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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y1661_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFNRNLTL VTTLLIFHQL CSNVSCSTSN SFTRNHTIRE GDSLISEDES FELGFFTPKN  60
   61 STLRYVGIWY KNIEPQTVVW VANREKPLLD HKGALKIADD GNLVIVNGQN ETIWSTNVEP 120
  121 ESNNTVAVLF KTGDLVLCSD SDRRKWYWES FNNPTDTFLP GMRVRVNPSL GENRAFIPWK 180
  181 SESDPSPGKY SMGIDPVGAL EIVIWEGEKR KWRSGPWNSA IFTGIPDMLR FTNYIYGFKL 240
  241 SSPPDRDGSV YFTYVASDSS DFLRFWIRPD GVEEQFRWNK DIRNWNLLQW KPSTECEKYN 300
  301 RCGNYSVCDD SKEFDSGKCS CIDGFEPVHQ DQWNNRDFSG GCQRRVPLNC NQSLVAGQED 360
  361 GFTVLKGIKV PDFGSVVLHN NSETCKDVCA RDCSCKAYAL VVGIGCMIWT RDLIDMEHFE 420
  421 RGGNSINIRL AGSKLGGGKE NSTLWIIVFS VIGAFLLGLC IWILWKFKKS LKAFLWKKKD 480
  481 ITVSDIIENR DYSSSPIKVL VGDQVDTPDL PIFSFDSVAS ATGDFAEENK LGQGGFGTVY 540
  541 KGNFSEGREI AVKRLSGKSK QGLEEFKNEI LLIAKLQHRN LVRLLGCCIE DNEKMLLYEY 600
  601 MPNKSLDRFL FDESKQGSLD WRKRWEVIGG IARGLLYLHR DSRLKIIHRD LKASNILLDT 660
  661 EMNPKISDFG MARIFNYRQD HANTIRVVGT YGYMAPEYAM EGIFSEKSDV YSFGVLILEI 720
  721 VSGRKNVSFR GTDHGSLIGY AWHLWSQGKT KEMIDPIVKD TRDVTEAMRC IHVGMLCTQD 780
  781 SVIHRPNMGS VLLMLESQTS QLPPPRQPTF HSFLNSGDIE LNFDGHDVAS VNDVTFTTIV 840
  841 GR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle