YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149029650, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVQRRCFLP VLVLGALLAL GSIEGSRNQN WHGVSRQLVT KVWNKQLYPE WTEVQGSNCW  60
   61 RGGQVSLKVR NDGPTLVGAN TSFSIALHFP GSQKVLPDGQ VIWVNNTIIN GSQVWGGQPV 120
  121 YPREPDDACI FPDGGPCPSG PKPPRRSFVY VWKTWGQYWQ VLGGPESKLS IPTGHARLGT 180
  181 HTMEVTVYHR RGSQSYVPLA HSSSTFTITG SVSRLLDDTD TIMLVKRQVP LDCVLYRYGS 240
  241 FSLTLDIVQG IESAEILQAV PSSEGDAFEL TVSCRGGLPK EACMDISSPG CQPPAQRLCQ 300
  301 PVPPSPDCQL VLHQILKGGL GTYCLNVSLA DANSLAVAST QLVVPGQEGS LGQAPLLVGV 360
  361 LLVLVAVVLA SLIYRHRLKK QDSVSQTPHG STHWLRLPPV FCARRLGESS PLLSGQQV

Type	Start	End	Confidence
Signal Peptide	1	25	0.96
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	350	0.99
Transmembrane Helix	351	374	0.88
Cytoplasmic	375	418	0.97