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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB20B_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD  60
   61 QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT ALIVYLHYFA KIVDVLAFSN 120
  121 DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN 180
  181 QDMSFFDTYG NNGDIVSQVL SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL 240
  241 ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS 300
  301 YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF 360
  361 AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA NQEGAVLASV QGNIEFRNVY 420
  421 FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI 480
  481 KNLKLEWLRS QIGLVTQEPA LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG 540
  541 YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG 600
  601 RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP 660
  661 VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS GVFRPQELCF DTEESPKAHS 720
  721 PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL 780
  781 TSDPKNERSH SQTFSRPLSS PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS 840
  841 LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY 900
  901 FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF 960
  961 IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK LWLAGFSKGI QEMHRKASLV1020
 1021 LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL1080
 1081 LWCTALSVNR GYMKLSTAIT EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP1140
 1141 TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK1200
 1201 STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH1260
 1261 NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP GQKQRIAIAR VVLKNAPIIL1320
 1321 IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH1380
 1381 DSLAAKNGLY VRLMQPHFGK GLRQHRLI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle