YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.72
Transmembrane Helix	41	55	0.39
Non-Cytoplasmic	56	122	0.56
Transmembrane Helix	123	142	0.88
Cytoplasmic	143	148	0.52
Transmembrane Helix	149	173	0.84
Non-Cytoplasmic	174	177	0.38
Transmembrane Helix	178	195	0.54
Cytoplasmic	196	207	0.81
Transmembrane Helix	208	229	0.93
Non-Cytoplasmic	230	235	0.79
Transmembrane Helix	236	257	0.92
Cytoplasmic	258	316	0.95
Transmembrane Helix	317	338	0.88
Non-Cytoplasmic	339	348	0.78
Transmembrane Helix	349	371	0.80
Cytoplasmic	372	379	0.82
Transmembrane Helix	380	400	0.95
Non-Cytoplasmic	401	407	0.72
Transmembrane Helix	408	429	0.85
Cytoplasmic	430	441	0.74
Transmembrane Helix	442	461	0.91
Non-Cytoplasmic	462	467	0.73
Transmembrane Helix	468	487	0.93
Cytoplasmic	488	515	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSLAPLLP THIEEDEDTS SPLTFDKILE KSLSDFGFSQ FLQIVLVGLA LTFDSQQIFI  60
   61 TVFTDAYPTW HCLDHTICNP ATTDICKIPR SAWDWDGGFK GKSVISEFDL ECSSSFLRSL 120
  121 PSSTFYVGSI VGGVVLAMIP DGSLGRKQLL FFSSFAMSLT GISIFLSSNI WIYSFLKFVI 180
  181 GFARSQTGTY ALVLISERIS TKWRPRATMV PFTLFVLGFM SLSGIAYLVR HASWKVLYLC 240
  241 TSIPAGIHSI FIYFFALESP RWLHLEGKNK EAIEVLKRIS PANRGYLESV SSRLRPKETL 300
  301 EQTSSYSIKD LFIIKWAFRR VTLVMIIMFG LGMSYYGVPL AVRDIKVNIY MSEALNAMVE 360
  361 LPTFVVTPIL LEQFSRRSSV LVNCLIGGAS GVLCFVMSLY GRTKIAFALE LGSFFCARIG 420
  421 FNLMAIYLVE LFPTCVRNSA TMMLRQALVV GGACCPLIAS LGRNVPSLSF AVFGFAMSGL 480
  481 GLFALLLPET KGLSLCDTME EQEQRDQALK TSHSC