YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.95
Transmembrane Helix	19	39	0.89
Non-Cytoplasmic	40	69	0.93
Transmembrane Helix	70	91	0.93
Cytoplasmic	92	99	0.92
Transmembrane Helix	100	121	0.92
Non-Cytoplasmic	122	129	0.70
Transmembrane Helix	130	151	0.85
Cytoplasmic	152	162	0.86
Transmembrane Helix	163	186	0.90
Non-Cytoplasmic	187	212	0.94
Transmembrane Helix	213	232	0.96
Cytoplasmic	233	295	0.98
Transmembrane Helix	296	314	0.78
Non-Cytoplasmic	315	344	0.68
Transmembrane Helix	345	365	0.76
Cytoplasmic	366	373	0.49
Transmembrane Helix	374	395	0.91
Non-Cytoplasmic	396	406	0.57
Transmembrane Helix	407	429	0.84
Cytoplasmic	430	441	0.57
Transmembrane Helix	442	465	0.77
Non-Cytoplasmic	466	482	0.71
Transmembrane Helix	483	504	0.88
Cytoplasmic	505	542	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGKEVLN ALDAAKTQMY HFTAIVIAGM GFFTDAYDLF SISLVTKLLG RIYYHVDSSK  60
   61 KPGTLPPNVA AAVNGVAFCG TLAGQLFFGW LGDKLGRKKV YGITLMLMVL CSLGSGLSFG 120
  121 HSANGVMATL CFFRFWLGFG IGGDYPLSAT IMSEYANKKT RGAFIAAVFA MQGFGILAGG 180
  181 IVSLIVSSTF DHAFKAPTYE VDPVGSTVPQ ADYVWRIVLM FGAIPALLTY YWRMKMPETA 240
  241 RYTALVARNT KQAASDMSKV LQVDLIAEEE AQSNSNSSNP NFTFGLFTRE FARRHGLHLL 300
  301 GTTTTWFLLD IAYYSSNLFQ KDIYTAIGWI PAAETMNAIH EVFTVSKAQT LIALCGTVPG 360
  361 YWFTVAFIDI LGRFFIQLMG FIFMTIFMFA LAIPYDHWRH RENRIGFLIM YSLTMFFANF 420
  421 GPNATTFVVP AEIFPARLRS TCHGISAASG KAGAIVGAFG FLYAAQSSDS EKTDAGYPPG 480
  481 IGVRNSLLML ACVNFLGIVF TLLVPESKGK SLEEISREDE EQSGGDTVVE MTVANSGRKV 540
  541 PV