YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6554205, gi\|6...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIVGVLLVS FTLLSHMNQF LHLFESPTFE IYPELGRDSQ LMTDPLGFQY LHSIYTFSLN  60
   61 PCSETNTNMK VVFVIFFFFL FQFCISVDTI MRRQSLRDGE VILSAGKRFA FGFFSLGDSE 120
  121 LRYVGIWYAQ ISQQTIVWVA NRDHPINDTS GMVKFSNRGN LSVYASDNET ELIWSTNVSD 180
  181 SMLEPTLVAT LSDLGNLVLF DPVTGRSFWE SFDHPTDTFL PFMRLGFTRK DGLDRSLTSW 240
  241 KSHGDPGSGD LILRMERRGF PQLILYKGVT PWWRMGSWTG HRWSGVPEMP IGYIFNNSFV 300
  301 NNEDEVSFTY GVTDASVITR TMVNETGTMH RFTWIARDKR WNDFWSVPKE QCDNYAHCGP 360
  361 NGYCDSPSSK TFECTCLPGF EPKFPRHWFL RDSSGGCTKK KRASICSEKD GFVKLKRMKI 420
  421 PDTSDASVDM NITLKECKQR CLKNCSCVAY ASAYHESKRG AIGCLKWHGG MLDARTYLNS 480
  481 GQDFYIRVDK EDIEVLQILS FLLVSARWNR NGLSGKRRVL LILISLIAAV MLLTVILFCV 540
  541 VRERRSKHRS SSANFAPVPF DFDESFRFEQ DKARNRELPL FDLNTIVAAT NNFSSQNKL

Type	Start	End	Confidence
Signal Peptide	1	19	0.53
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	518	0.91
Transmembrane Helix	519	541	0.95
Cytoplasmic	542	599	0.94