YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.97
Transmembrane Helix	18	41	0.89
Non-Cytoplasmic	42	82	0.95
Transmembrane Helix	83	102	0.90
Cytoplasmic	103	111	0.76
Transmembrane Helix	112	133	0.88
Non-Cytoplasmic	134	137	0.57
Transmembrane Helix	138	156	0.90
Cytoplasmic	157	168	0.68
Transmembrane Helix	169	190	0.90
Non-Cytoplasmic	191	198	0.76
Transmembrane Helix	199	219	0.95
Cytoplasmic	220	279	0.96
Transmembrane Helix	280	302	0.86
Non-Cytoplasmic	303	314	0.81
Transmembrane Helix	315	338	0.91
Cytoplasmic	339	344	0.95
Transmembrane Helix	345	366	0.89
Non-Cytoplasmic	367	379	0.77
Transmembrane Helix	380	400	0.92
Cytoplasmic	401	416	0.81
Transmembrane Helix	417	438	0.93
Non-Cytoplasmic	439	446	0.79
Transmembrane Helix	447	468	0.92
Cytoplasmic	469	507	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVVSNANA PAFEAKMTVY VFICVMIAAV GGLIFGYDIG ISGGVSAMDD FLKEFFPAVW  60
   61 ERKKHVHENN YCKYDNQFLQ LFTSSLYLAA LVASFVASAT CSKLGRRPTM QFASIFFLIG 120
  121 VGLTAGAVNL VMLIIGRLFL GFGVGFGNQA VPLFLSEIAP AQLRGGLNIV FQLMVTIGIL 180
  181 IANIVNYFTA TVHPYGWRIA LGGAGIPAVI LLFGSLLIIE TPTSLIERNK NEEGKEALRK 240
  241 IRGVDDINDE YESIVHACDI ASQVKDPYRK LLKPASRPPF IIGMLLQLFQ QFTGINAIMF 300
  301 YAPVLFQTVG FGSDAALLSA VITGSINVLA TFVGIYLVDR TGRRFLLLQS SVHMLICQLI 360
  361 IGIILAKDLG VTGTLGRPQA LVVVIFVCVY VMGFAWSWGP LGWLIPSETF PLETRSAGFA 420
  421 VAVSCNMFFT FVIAQAFLSM LCGMRSGIFF FFSGWIIVMG LFAFFFIPET KGIAIDDMRE 480
  481 SVWKPHWFWK RYMLPEDDHH DIEKRNA