YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6729030
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAGVLPIV FLLILSSADL AASQSQPGPT NQPYNYGRLS PAMAVIVVIL IAALFFMGFF  60
   61 SIYFRHCSGV PDAGVSPAGG ARSRATVNAA ARGLDVSVVE TFPTFLYSDV KTQKLGKGEL 120
  121 ECAICLNEFE DDETLRLLPK CDHVFHPHCI DAWLEAHVTC PVCRANLAEQ VAEGESVEPG 180
  181 GTEPDLELQQ VVVNPEPVVT APVPEQLVTS EVDSRRLPGV PVDLKRVKFS RSHTTGHSVV 240
  241 QPGECTERFT LRLPEDVRKR IMKDWKLNRT NSLLVLPRGG SSRRGKPIDR SRARSDRWLF 300
  301 RKTPSFLWRS RDDGSIRLGA TGSVRASAVP NSTGSDSVRA GDRWAFLRNA SFLWRNSSVH 360
  361 VPRGGVNKDG EGTSVKSTGA SGSTSGSVRL PV

Type	Start	End	Confidence
Signal Peptide	1	23	0.81
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	41	0.85
Transmembrane Helix	42	64	0.75
Cytoplasmic	65	392	0.76