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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157817488, gi...
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVEASADQG PPGPSVPPPP PALPPQPEPA AFSMPSTNVT LETLLSTKVA VAQFSQGARA  60
   61 GGTTGAGGSV GAVAIPMILE QLVALQQQQI HQLQLIEQIR SQVALMSRQP GPPLKPSASA 120
  121 PGAASVQLPG LTPHASLQLS AGPATASAGS GSTLSAAFDG PQHLSQPQPA SGTSTPCSTS 180
  181 AGPTDSGAHP ACSTGPAPGA VAAASSTVGN TVQPQNASTP PALGPGPLLS SASSLPSPLL 240
  241 PQTSSSSVIF PNPLVSIAAT ANALDPLSAL MKHRKGKPPN VSVFEPKASA EDPFFKHKCR 300
  301 FCAKVFGSDS ALQIHLRSHT GERPFKCNIC GNRFSTKGNL KVHFQRHKEK YPHIQMNPYP 360
  361 VPEYLDNVPT CSGIPYGMSL PPEKPVTTWL DSKPVLPTVP TSVGLQLPPT VPGTHNYTDS 420
  421 PSITPISRSP QRPSPASSEC TSLSPGLNNT ESGITVRPES PQPLLGGPPL TKAEPVSLPC 480
  481 TSTRTGDAPV VGGQVSGLPT PAATTVTDSA CTSLGSPGLP AVSDQFKAQF PFGGLLDSMQ 540
  541 TSETSKLQQL VENIDKKMTD PNQCVICHRV LSCQSALKMH YRTHTGERPF KCKICGRAFT 600
  601 TKGNLKTHFG VHRAKPPLRV QHSCPICQKK FTNAVVLQQH IRMHMGGQIP NTPLPEGLQE 660
  661 AMDAELPFDE KNAETLSSFD DDVDENSMEE DSELKDTASD SSKPLLSYSG SCPPSPPSVI 720
  721 SSIAALENQM KMIDSVMNCQ QLASLKSVEN GSGESDRLSN DSSSAVGDLE SRSAGSPALS 780
  781 ESSSSQALSP AHSNGESFRS KSPGLSHQED PQEIPLKTER LDSPPPGPGN GGALDLTAGH 840
  841 PGRPLIKEEA PFSLLFLSRE RGKCASTVCG VCGKPFACKS ALEIHYRSHT KERPFVCTVC 900
  901 RRGCSTMGNL KQHLLTHKLK ELPSQVFDPN FTLGPSHSTP SLASSPAPTM IKMEVNGHSK 960
  961 AIALGEGPAL PAGVQVPTGP QTVMSPGLAP MLAPPPRRTP KQHNCQSCGK TFSSASALQI1020
 1021 HERTHTGEKP FGCTICGRAF TTKGNLKVHM GTHMWNNAPA RRGRRLSVEN PMALLGGDAL1080
 1081 KFSEMFQKDL AARAMNVDPS FWNQYAAAIT NGLAMKNNEI SVIQNGGIPQ LPVSLGGGAI1140
 1141 PPLGAMAGGV DKTRTGSSPP IVSLDKASPE TGASRPFTRF IEDNKEIGIN 

YRC Informatics Platform - Version 3.0
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