YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157822875, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	31	0.91
Non-Cytoplasmic	32	54	0.94
Transmembrane Helix	55	74	0.89
Cytoplasmic	75	81	0.76
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	110	0.72
Transmembrane Helix	111	130	0.93
Cytoplasmic	131	141	0.86
Transmembrane Helix	142	163	0.89
Non-Cytoplasmic	164	170	0.80
Transmembrane Helix	171	192	0.92
Cytoplasmic	193	265	0.99
Transmembrane Helix	266	284	0.83
Non-Cytoplasmic	285	304	0.72
Transmembrane Helix	305	324	0.90
Cytoplasmic	325	333	0.73
Transmembrane Helix	334	354	0.91
Non-Cytoplasmic	355	362	0.67
Transmembrane Helix	363	383	0.88
Cytoplasmic	384	390	0.75
Transmembrane Helix	391	413	0.89
Non-Cytoplasmic	414	425	0.86
Transmembrane Helix	426	447	0.90
Cytoplasmic	448	481	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCCRTPPRD SWVYPTVILC LFGFFSMFRP SESFLIPFLS GPSKNLTSTE MTNEILPVWT  60
   61 YSYLAMLPPV FVLTDYLRYK PIIMLHVMAF TICYLFLLFG QSVMLMQTAE FFFGIVSATE 120
  121 IAYFAYIYSM VSPEHYQKVS SYCRSITLVS YTAGSVLAQL LVSLMNVPYS TLFYISLACV 180
  181 SVAFFVSLFL PMPKKSMFFH TKPNREACPK PLEPCTVLKE AHNNGAQPEL FANAQNLGDR 240
  241 EQDNSALRIF VYWFQDLKEC YSSKHLVYWS LWWAFATAGY NQILNFVQVL WEQKAPSKDS 300
  301 SIYNGAVEAI ATFGALASFS VGYIKVDWDL LGELGLAVFS AVVAGSLLLM NYTLSIWVCY 360
  361 TGYVLVKSSY SFLITIAVFQ IAVNLSLERY ALVFGIDTFI ALVIQTIMTM IVADQRGLQL 420
  421 PVTTQFLVYG SYFAVIAGVF LIRSIYILYS AKCRKEVQNL ATTQSPGEPY LQEPRDVSTK 480
  481 F