YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10177017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYKPYEAS TNLEEEEEEE IRFFPFLSSL PLSRRGHASA ASLPANLLRG LPPLTIVVVT  60
   61 RRKIHFSVLI IIVFYVRCSD DLMEQIHSLV HRHPDKLSIE LIKSGNKGYN AEVNVVTYCR 120
  121 GGKESDDRSN FRILLTFGQH GRELITSELA FRILSILSEE QFLPNKNGGI LKNTLDKLVI 180
  181 KMVPIENPNG RKRVESGDLC ERRNGRGVDL NRNWGVDWGK KEKDYDPSEE NPGTAPFSEP 240
  241 ETQIMRKLAI SFDPHIWINV HSGMEALFMP YDHKNITPEG LPSQKMRTLL EKLNKFHCHD 300
  301 RCMIGSGGGS VGYLAHGTAT DYIYDVVKAP MAFTFEIYGD NQTASRDCFK MFNPVDLPNF 360
  361 KRVLNDWSAA FFTIFQLGPL HLDGNTSKAA DKWVSIDEYL DGYLVERKNR YGKNMEVIDV 420
  421 GMQEIKTYFR LFLLSSVLLM FMFCSRIAKS KYSRNSMPVL P

Type	Start	End	Confidence
Non-Cytoplasmic	1	427	0.89
Transmembrane Helix	428	448	0.81
Cytoplasmic	449	461	0.79