YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUN1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTVSITA NTAAATRRTP ILAGEKKSNF DYPQSESLAN GGVGEAGGTS RDLSRGEATL  60
   61 DRSQGQDLGP VTRRSVSAAT GTNTTATQRR TRKVATPKSE KARWKTVVRI FAKQLGALLI 120
  121 IVGLIQLTRK MILKASSPSS PISSYETEMA FSGLESRIAE VDGLVKATTN SMQVQVELLD 180
  181 KKMEREAKVL RQEIERKASA FQSELKKIES RTESLEKSVD EVNAKPWVTK DELERIYEEL 240
  241 KKGNVDDSAF SEISIDELRA YARDIMEKEI EKHAADGLGR VDYALASGGA FVMEHSDPYL 300
  301 VGKGSSWFAT TMRRAHTNAV KMLSPSFGEP GQCFPLKGSE GYVQIRLRGP IIPEAFTLEH 360
  361 VAKSVAYDRS SAPKDCRVSG SLQGPESSAE TENMQLLTEF TYDLDRSNAQ TFNILESSSS 420
  421 GLIDTVRLDF TSNHGSDSHT CIYRFRVHGR APDPVPVVGT NLDQDSSPES E

Type	Start	End	Confidence
Cytoplasmic	1	109	0.52
Transmembrane Helix	110	128	0.50
Non-Cytoplasmic	129	471	0.99