YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFSSSVKL KYVKLGYQYL INNFLTLLLI PVIATVAIEL LRMGPEEILS VLNSLHFELL  60
   61 HILCSSFLII FVSTVYFMSK PRTVYLVDYS CYKPPVTCRV PFSSFMEHSR LILKDNPKSV 120
  121 EFQMRILERS GLGEETCLPP AIHYIPPTPT MESARNEAQM VIFTAMEDLF KNTGLKPKDI 180
  181 DILIVNCSLF SPTPSLSAMI INKYKLRSNI KSYNLSGMGC SASLISVDVA RDLLQVHPNS 240
  241 NAIIISTEII TPNYYKGNER AMLLPNCLFR MGGAAILLSN RRSDRWRAKY KLCHLVRTHR 300
  301 GADDKSYNCV MEQEDKNGNV GINLSKDLMT IAGEALKANI TTIGPLVLPA SEQLLFLSSL 360
  361 IGRKIFNPKW KPYIPDFKQA FEHFCIHAGG RAVIDELQKN LQLSGEHVEA SRMTLHRFGN 420
  421 TSSSSLWYEL SYIEAQGRMK RNDRVWQIAF GSGFKCNSAV WKCNRTIKTP TDGAWSDCIE 480
  481 RYPVFIPEVV KL

Type	Start	End	Confidence
Cytoplasmic	1	18	0.85
Transmembrane Helix	19	41	0.89
Non-Cytoplasmic	42	56	0.82
Transmembrane Helix	57	77	0.92
Cytoplasmic	78	492	0.61